Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 IFNA20P-201ENST00000436840 528 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 GPM6BP3-201ENST00000442797 145 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 RNU6-1088P-201ENST00000516850 104 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 MIR4742-201ENST00000581069 85 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 MIR5194-201ENST00000582634 120 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 AC006023.1-201ENST00000603944 259 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 AL133216.2-202ENST00000634512 349 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 AL450472.1-202ENST00000637286 180 ntBASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
LIMA1Q9UHB6 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 MIRLET7G-201ENST00000362280 84 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 Y_RNA.151-201ENST00000363566 112 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 Y_RNA.184-201ENST00000363884 108 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 RNU4-56P-201ENST00000364700 142 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 RNU6-790P-201ENST00000384479 105 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 RNU2-41P-201ENST00000410991 178 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 AC009963.1-201ENST00000417265 157 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 AL590556.1-201ENST00000423231 483 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 RNU6-329P-201ENST00000459618 107 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 PTP4A1P4-201ENST00000512479 322 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 RAB11AP2-201ENST00000545905 639 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 AC021231.3-201ENST00000558497 370 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 AL117336.2-201ENST00000602435 335 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 MIR8076-201ENST00000611401 83 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 Y_RNA.804-201ENST00000615262 101 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 MTND4P12-201ENST00000498999 1377 ntBASIC2.49□□□□□ -2.01
LIMA1Q9UHB6 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 RNU4-15P-201ENST00000362613 141 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 RNU6-944P-201ENST00000364023 107 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 Y_RNA.301-201ENST00000364990 103 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 MIR561-201ENST00000385216 97 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AL356432.1-201ENST00000405809 419 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 EIF1AXP1-201ENST00000419267 435 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AC009238.1-201ENST00000442165 424 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AC009237.6-201ENST00000446969 424 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 PCMTD1P1-201ENST00000455560 355 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AC104564.1-201ENST00000493028 407 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AC046134.1-201ENST00000514454 666 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 RNU6-566P-201ENST00000516790 107 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AP005639.2-201ENST00000527592 928 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AC026464.5-201ENST00000562497 722 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AC078795.3-201ENST00000602913 472 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 MIR3976-201ENST00000606807 139 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AC025253.1-201ENST00000613623 543 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 AC104985.2-201ENST00000620598 500 ntBASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
LIMA1Q9UHB6 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 Y_RNA.123-201ENST00000363338 102 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 SNORA36A-201ENST00000384221 132 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 MIR517A-201ENST00000385001 87 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 MTND3P8-201ENST00000412909 339 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 DAP3P1-201ENST00000441522 278 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 MTND1P17-201ENST00000448961 204 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 PPP1R2P5-201ENST00000457256 603 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 AC068781.1-201ENST00000488231 618 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 RNA5SP82-201ENST00000516707 92 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 RNU7-30P-201ENST00000516835 62 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 RNA5SP454-201ENST00000517231 127 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 AL078605.1-201ENST00000603529 500 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 Z98751.3-201ENST00000604447 521 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 AL022345.1-201ENST00000607292 135 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 AC063943.3-201ENST00000615562 356 ntBASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
LIMA1Q9UHB6 RN7SKP32-201ENST00000410167 303 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms