Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 RNU6-264P-201ENST00000517134 104 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.13□□□□□ -1.91
DDX56Q9NY93 CBX3P8-201ENST00000532412 525 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 BNIP3P22-201ENST00000593399 556 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 AL158827.2-201ENST00000602494 330 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 AL356575.1-201ENST00000603008 283 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 AC007318.2-201ENST00000620999 243 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 AL691447.3-201ENST00000635020 330 ntBASIC3.13□□□□□ -1.91
DDX56Q9NY93 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX56Q9NY93 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX56Q9NY93 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX56Q9NY93 AC000403.1-201ENST00000613696 3585 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
DDX56Q9NY93 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
DDX56Q9NY93 Y_RNA.813-201ENST00000364639 102 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 Y_RNA.460-201ENST00000384255 102 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 MIR32-201ENST00000384965 70 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 Y_RNA.579-201ENST00000390939 94 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 MIR887-201ENST00000401258 79 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 BMS1P22-201ENST00000414726 313 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 AL139281.1-201ENST00000422120 335 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 ARL5AP4-201ENST00000430731 512 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 RN7SL807P-201ENST00000470923 297 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 AP004217.1-201ENST00000480579 346 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 HMGN1P13-201ENST00000505795 138 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 SCARNA16.2-201ENST00000516520 172 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 RNA5SP54-201ENST00000516951 92 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 AC104581.2-201ENST00000572227 430 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 MIR5004-201ENST00000579078 107 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 MIR1254-2-201ENST00000579553 63 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.12□□□□□ -1.91
DDX56Q9NY93 MIR6075-201ENST00000620782 95 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 AC092608.2-201ENST00000624427 218 ntBASIC3.12□□□□□ -1.91
DDX56Q9NY93 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
DDX56Q9NY93 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
DDX56Q9NY93 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
DDX56Q9NY93 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
DDX56Q9NY93 RNU6-137P-201ENST00000363680 108 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 RNU6-611P-201ENST00000384276 104 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 RPS20P15-201ENST00000412792 311 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 MTND4P28-201ENST00000426217 387 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX56Q9NY93 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.11□□□□□ -1.91
DDX56Q9NY93 PRSS3P4-201ENST00000453323 162 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX56Q9NY93 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.11□□□□□ -1.91
DDX56Q9NY93 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.11□□□□□ -1.91
DDX56Q9NY93 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX56Q9NY93 Y_RNA.706-201ENST00000516933 99 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.11□□□□□ -1.91
DDX56Q9NY93 AC090517.1-201ENST00000569307 266 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 MIR4444-1-201ENST00000581696 74 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 MIR4444-2-201ENST00000584390 74 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 SNRPGP20-201ENST00000604477 205 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 AC100812.1-201ENST00000607622 580 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 AC012314.7-201ENST00000619693 93 ntBASIC3.11□□□□□ -1.91
DDX56Q9NY93 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
DDX56Q9NY93 RNY1P16-201ENST00000363063 111 ntBASIC3.1□□□□□ -1.91
DDX56Q9NY93 RNU1-91P-201ENST00000364746 163 ntBASIC3.1□□□□□ -1.91
DDX56Q9NY93 Y_RNA.431-201ENST00000384086 102 ntBASIC3.1□□□□□ -1.91
DDX56Q9NY93 RNU6-541P-201ENST00000384709 110 ntBASIC3.1□□□□□ -1.91
DDX56Q9NY93 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
DDX56Q9NY93 SNORA12-201ENST00000391162 147 ntBASIC3.1□□□□□ -1.91
DDX56Q9NY93 SNORA11-201ENST00000408789 128 ntBASIC3.1□□□□□ -1.91
DDX56Q9NY93 RNA5SP344-201ENST00000411081 104 ntBASIC3.1□□□□□ -1.91
DDX56Q9NY93 AP000705.1-201ENST00000454567 350 ntBASIC3.1□□□□□ -1.91
DDX56Q9NY93 ELOCP24-201ENST00000456370 334 ntBASIC3.1□□□□□ -1.91
DDX56Q9NY93 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.1□□□□□ -1.91
DDX56Q9NY93 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.1□□□□□ -1.91
DDX56Q9NY93 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.1□□□□□ -1.91
DDX56Q9NY93 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.1□□□□□ -1.91
DDX56Q9NY93 MIR3126-201ENST00000577443 74 ntBASIC3.1□□□□□ -1.91
DDX56Q9NY93 AL160413.1-201ENST00000622780 310 ntBASIC3.1□□□□□ -1.91
DDX56Q9NY93 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
DDX56Q9NY93 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.09□□□□□ -1.91
DDX56Q9NY93 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
DDX56Q9NY93 RNU5F-3P-201ENST00000363767 117 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 Y_RNA.187-201ENST00000363918 113 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 Y_RNA.394-201ENST00000383942 103 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 RNU6-890P-201ENST00000384121 107 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 MTCYBP10-201ENST00000424905 650 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 RNU7-152P-201ENST00000458982 64 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 AC007215.1-201ENST00000464893 276 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 AC117440.1-201ENST00000474107 571 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 AC027575.1-201ENST00000481064 460 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 RNU6-120P-201ENST00000516077 103 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 RNU6-965P-201ENST00000516721 96 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 RNU6-667P-201ENST00000517186 102 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 AC034114.1-201ENST00000520293 285 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.09□□□□□ -1.91
DDX56Q9NY93 CYCSP26-201ENST00000534107 320 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 AC026271.5-201ENST00000577873 130 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 MIR4429-201ENST00000580105 73 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.09□□□□□ -1.91
DDX56Q9NY93 AL161756.2-201ENST00000604597 246 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 AC080078.3-201ENST00000605407 463 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 AC084757.4-201ENST00000616350 526 ntBASIC3.09□□□□□ -1.91
DDX56Q9NY93 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.92
DDX56Q9NY93 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.09□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 175.7 ms