Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC144521.1-201ENST00000607148 956 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AC104073.3-201ENST00000610942 955 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 SNORD98-201ENST00000636377 67 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 RNU6-105P-201ENST00000363909 104 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 RNU1-96P-201ENST00000364163 162 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 RNU6-910P-201ENST00000390844 107 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 RPL23AP95-201ENST00000426806 265 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 RAB28P5-201ENST00000427490 651 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC092628.1-201ENST00000436250 252 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC244670.1-201ENST00000436879 112 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC016925.1-201ENST00000458303 298 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 MIR5692A1-201ENST00000580523 69 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC136475.10-201ENST00000620253 385 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 RNU6-212P-201ENST00000362642 104 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 RNU6-439P-201ENST00000384188 106 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 MIR508-201ENST00000384857 115 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 MIR216A-201ENST00000385063 110 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AL356776.1-201ENST00000406574 447 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 RAP1BP3-201ENST00000407180 549 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 RNU6-1146P-201ENST00000516282 102 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 SNORA43.2-201ENST00000516652 128 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 CENPUP1-201ENST00000526649 1202 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AP003168.1-201ENST00000530091 307 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC123904.2-201ENST00000548059 300 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC133485.1-201ENST00000567176 124 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC138907.6-201ENST00000568401 126 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 BNIP3P16-201ENST00000589779 534 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AL022345.2-201ENST00000606307 135 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC004492.1-201ENST00000607036 742 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AL021879.1-201ENST00000611756 288 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 MIR8063-201ENST00000621930 81 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 AC120349.3-201ENST00000624377 529 ntBASIC0.54□□□□□ -2.32
SCN3AQ9NY46 RNU6-1141P-201ENST00000364520 107 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 RNU6-224P-201ENST00000384055 107 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.53□□□□□ -2.32
SCN3AQ9NY46 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.53□□□□□ -2.32
SCN3AQ9NY46 AL606490.4-201ENST00000423117 127 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 CALM2P2-201ENST00000428512 440 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.53□□□□□ -2.32
SCN3AQ9NY46 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC0.53□□□□□ -2.32
SCN3AQ9NY46 AC092989.1-201ENST00000481235 277 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 RPS23P5-201ENST00000495419 428 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC0.53□□□□□ -2.32
SCN3AQ9NY46 RNU6-322P-201ENST00000516010 103 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 RNU5F-4P-201ENST00000516581 114 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.53□□□□□ -2.32
SCN3AQ9NY46 AC002400.1-201ENST00000569310 726 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 AC009229.3-201ENST00000608056 282 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 RMST_4.1-201ENST00000616886 107 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 AC024940.5-201ENST00000622889 474 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 AC126544.2-201ENST00000625174 749 ntBASIC0.53□□□□□ -2.32
SCN3AQ9NY46 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
SCN3AQ9NY46 RNU4-15P-201ENST00000362613 141 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 U3.4-201ENST00000363352 213 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 Y_RNA.324-201ENST00000365165 102 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 COX6CP10-201ENST00000416832 224 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AL589872.1-201ENST00000426602 288 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AL117351.1-201ENST00000438864 766 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AL358794.1-201ENST00000445689 381 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AL139824.2-201ENST00000458731 1095 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC013828.2-201ENST00000532487 235 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC023050.2-201ENST00000544968 387 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC090578.1-201ENST00000604955 591 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC106800.4-201ENST00000614905 153 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC026585.1-201ENST00000619582 524 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC068205.3-201ENST00000636385 468 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC092268.1-201ENST00000342691 405 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 snoU2-30.2-201ENST00000362805 70 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 RNU6-960P-201ENST00000364056 120 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 RNU6-61P-201ENST00000365528 109 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 MIR193B-201ENST00000384907 83 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 MTATP6P20-201ENST00000414147 562 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AL591043.1-201ENST00000432461 424 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC245047.7-201ENST00000440265 293 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AL360271.2-201ENST00000447710 161 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC006026.2-201ENST00000457376 180 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 AC007547.1-201ENST00000462177 490 ntBASIC0.52□□□□□ -2.33
SCN3AQ9NY46 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms