Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.95□□□□□ -2.1
DDX28Q9NUL7 TRAV32-201ENST00000553993 340 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 AL157687.1-201ENST00000554853 619 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 MIR3935-201ENST00000583472 104 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 RNU6-89P-201ENST00000606519 100 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 AL121757.2-201ENST00000611223 313 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 MIR1321-201ENST00000637766 79 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 OR4G1P-203ENST00000641984 1631 ntBASIC1.95□□□□□ -2.1
DDX28Q9NUL7 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
DDX28Q9NUL7 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.94□□□□□ -2.1
DDX28Q9NUL7 RNU6-1159P-201ENST00000362933 107 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 Y_RNA.167-201ENST00000363735 109 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 RNU6-1329P-201ENST00000365664 107 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 MIR181A1-201ENST00000385026 110 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 SNORA48.3-201ENST00000391081 134 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 SNORA26.3-201ENST00000391119 136 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 MIR1294-201ENST00000408503 142 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 RNU6-908P-201ENST00000410160 94 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 SRIP3-201ENST00000413200 219 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
DDX28Q9NUL7 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.94□□□□□ -2.1
DDX28Q9NUL7 ERLEC1P1-201ENST00000433806 578 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 AL359672.1-201ENST00000442302 409 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.94□□□□□ -2.1
DDX28Q9NUL7 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.94□□□□□ -2.1
DDX28Q9NUL7 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.94□□□□□ -2.1
DDX28Q9NUL7 PRELID3BP1-201ENST00000457142 540 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 AC145146.1-201ENST00000496370 254 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 AC008628.2-201ENST00000502605 298 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.94□□□□□ -2.1
DDX28Q9NUL7 RNA5SP200-201ENST00000516360 103 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 RNA5SP281-201ENST00000516504 135 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 SNORA31.16-201ENST00000516773 139 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 AK6P1-201ENST00000540219 478 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 AC007375.1-201ENST00000554513 578 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.94□□□□□ -2.1
DDX28Q9NUL7 MIR3923-201ENST00000579521 83 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 AF250324.2-201ENST00000608299 610 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 AL359314.1-201ENST00000616913 261 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.94□□□□□ -2.1
DDX28Q9NUL7 FER-210ENST00000628534 558 ntTSL 5 BASIC1.94□□□□□ -2.1
DDX28Q9NUL7 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
DDX28Q9NUL7 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
DDX28Q9NUL7 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.94□□□□□ -2.1
DDX28Q9NUL7 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.93□□□□□ -2.1
DDX28Q9NUL7 SNORD32B-201ENST00000364460 84 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 MIR518A2-201ENST00000384966 87 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
DDX28Q9NUL7 MTCYBP2-201ENST00000407745 171 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.93□□□□□ -2.1
DDX28Q9NUL7 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.93□□□□□ -2.1
DDX28Q9NUL7 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.93□□□□□ -2.1
DDX28Q9NUL7 AC245102.2-201ENST00000448956 180 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 snoU13.23-201ENST00000458863 104 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 Y_RNA.638-201ENST00000459374 113 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 RPL23AP42-201ENST00000471152 471 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 AC132942.1-201ENST00000486753 483 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 AC108210.2-201ENST00000503681 201 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.93□□□□□ -2.1
DDX28Q9NUL7 AC025423.5-201ENST00000550230 219 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.93□□□□□ -2.1
DDX28Q9NUL7 AC064836.2-201ENST00000609491 462 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.93□□□□□ -2.1
DDX28Q9NUL7 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.93□□□□□ -2.1
DDX28Q9NUL7 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
DDX28Q9NUL7 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
DDX28Q9NUL7 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.92□□□□□ -2.1
DDX28Q9NUL7 RNU6-522P-201ENST00000364497 107 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 RNA5SP160-201ENST00000364866 120 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
DDX28Q9NUL7 RNU6-214P-201ENST00000384130 107 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 MIR221-201ENST00000385135 110 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 MIR29C-201ENST00000385231 88 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 BTF3L4P2-201ENST00000392798 346 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 HMGN2P19-201ENST00000425149 265 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 AC096638.1-201ENST00000444678 216 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.92□□□□□ -2.1
DDX28Q9NUL7 RPL23AP3-201ENST00000453844 468 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 HMGB3P17-201ENST00000504195 649 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 PTP4A1P4-201ENST00000512479 322 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 RNU6-720P-201ENST00000516363 108 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 RNU2-44P-201ENST00000516795 194 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 RNU6-612P-201ENST00000516909 102 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.92□□□□□ -2.1
DDX28Q9NUL7 AC021231.3-201ENST00000558497 370 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 EIF1P4-201ENST00000572664 335 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 MIR5002-201ENST00000584713 97 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 AC010525.2-201ENST00000590920 195 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 AP000654.2-201ENST00000605633 586 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 MIR6132-201ENST00000622083 109 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.92□□□□□ -2.1
DDX28Q9NUL7 MIR1248-201ENST00000629190 106 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 MTND4P23-201ENST00000447723 1363 ntBASIC1.92□□□□□ -2.1
DDX28Q9NUL7 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AC008555.8-201ENST00000623602 2168 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 Y_RNA.504-201ENST00000384481 104 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 SNORD116-4-201ENST00000384733 96 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 MIR1262-201ENST00000408276 93 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 RNU4-26P-201ENST00000410270 107 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms