Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RNU5F-7P-201ENST00000363696 115 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 RNU6-925P-201ENST00000384629 104 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 AL356776.1-201ENST00000406574 447 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 RNU2-8P-201ENST00000410727 190 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 MTATP6P19-201ENST00000413797 659 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 AL117339.3-201ENST00000418733 162 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 USP9YP14-201ENST00000430663 563 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 MTCO2P6-201ENST00000463134 685 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 AC091435.1-201ENST00000505442 584 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 RNU6-311P-201ENST00000516224 102 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 AC090517.1-201ENST00000569307 266 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 AC023043.2-201ENST00000589678 1026 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 AC011494.1-201ENST00000596454 237 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 AC004492.1-201ENST00000607036 742 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 SCARNA15.3-201ENST00000626315 122 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 SCARNA4.1-201ENST00000628597 123 ntBASIC0.98□□□□□ -2.25
VCX3AQ9NNX9 RNU6-545P-201ENST00000362681 104 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 RNU6-418P-201ENST00000384035 107 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 RNU6-1026P-201ENST00000384465 108 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 Y_RNA.504-201ENST00000384481 104 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 SNORA67.5-201ENST00000391036 107 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 RNU4-26P-201ENST00000410270 107 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 CST2P1-201ENST00000425770 87 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 RNA5SP384-201ENST00000516615 116 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 RN7SKP88-201ENST00000516847 250 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 RNU6-856P-201ENST00000516959 98 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 AL442163.3-201ENST00000554110 156 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 AC103996.1-201ENST00000555468 102 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 CYP4A27P-201ENST00000567218 190 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 BNIP3P22-201ENST00000593399 556 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 VN1R107P-201ENST00000601784 209 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 AL356157.2-201ENST00000605122 111 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 Z99289.3-201ENST00000605586 594 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 AC008945.2-201ENST00000606056 604 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 7SK.8-201ENST00000612110 250 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 7SK.11-201ENST00000615477 250 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 MIR7844-201ENST00000616161 122 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 7SK.13-201ENST00000622040 250 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 AC099654.5-201ENST00000636479 350 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 ANKRD20A9P-201ENST00000457997 2978 ntBASIC0.97□□□□□ -2.25
VCX3AQ9NNX9 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 RNA5SP190-201ENST00000365222 118 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 AC073614.1-201ENST00000438690 650 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 AL031274.1-201ENST00000450334 232 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 AC114982.1-201ENST00000469402 321 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 RPS23P5-201ENST00000495419 428 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 AL163195.1-201ENST00000496941 348 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 AC016632.1-201ENST00000503994 196 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 AC011406.1-201ENST00000512440 370 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 Vault.3-201ENST00000516676 95 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 RNU6-295P-201ENST00000516901 104 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 MIR4775-201ENST00000581168 75 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 MIR4672-201ENST00000583126 81 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 AC098848.2-201ENST00000588023 330 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 AC009994.1-201ENST00000606889 253 ntBASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC0.96□□□□□ -2.26
VCX3AQ9NNX9 Y_RNA.132-201ENST00000363421 102 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 RNU6-827P-201ENST00000365553 106 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 SNORA70.7-201ENST00000384159 133 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 USP9YP28-201ENST00000435142 589 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 UBE2D3P4-201ENST00000441973 436 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 PGBD4P5-201ENST00000445958 426 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 MTND2P39-201ENST00000457230 764 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 AK3P2-201ENST00000507976 429 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 AP003461.1-201ENST00000528866 78 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 MIR3664-201ENST00000579074 99 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 AC091805.2-201ENST00000603848 235 ntBASIC0.95□□□□□ -2.26
VCX3AQ9NNX9 AC005014.3-201ENST00000605985 190 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms