Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNY3P15-201ENST00000516297 97 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 IGHV3-76-201ENST00000522465 295 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 UBL5P4-201ENST00000562584 236 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 MIR5004-201ENST00000579078 107 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 AC096772.1-201ENST00000609146 564 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 AC130454.1-201ENST00000622948 401 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 SNORD98-201ENST00000636377 67 ntBASIC3.39□□□□□ -1.87
PCIF1Q9H4Z3 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.19-201ENST00000362462 99 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-1010P-201ENST00000362757 107 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 RNA5SP383-201ENST00000362934 120 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-611P-201ENST00000384276 104 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.556-201ENST00000384677 113 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 RPS12P18-201ENST00000442381 270 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 AL441985.1-201ENST00000457727 251 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 IGKV2-23-201ENST00000518729 323 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 AC115990.1-201ENST00000526957 301 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 HSPE1P20-201ENST00000538133 289 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 AC110588.1-201ENST00000559699 137 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 AC105137.2-201ENST00000569073 466 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 AC125232.2-201ENST00000592457 143 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 AC012493.2-201ENST00000595083 291 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 AC137590.2-201ENST00000619709 240 ntBASIC3.38□□□□□ -1.87
PCIF1Q9H4Z3 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-529P-201ENST00000363383 104 ntBASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-770P-201ENST00000363929 105 ntBASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.461-201ENST00000384263 103 ntBASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-318P-201ENST00000384283 103 ntBASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-541P-201ENST00000384709 110 ntBASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 MIR10B-201ENST00000385011 110 ntBASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-121P-201ENST00000410525 99 ntBASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 AC012306.1-201ENST00000423267 114 ntBASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 RPS27P26-201ENST00000494583 239 ntBASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 RNU5F-2P-201ENST00000516066 82 ntBASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
PCIF1Q9H4Z3 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 AC073346.2-201ENST00000624724 2058 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 RNA5SP361-201ENST00000362686 118 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.183-201ENST00000363882 113 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 MT-TW-201ENST00000387382 68 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.618-201ENST00000410949 107 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 RPS26P42-201ENST00000413485 326 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 AC009414.1-201ENST00000427200 443 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 RPL23AP83-201ENST00000434984 473 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 RPS15AP7-201ENST00000439294 405 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 AC096638.1-201ENST00000444678 216 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 LINC01399-202ENST00000458450 244 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 RN7SL20P-201ENST00000488827 297 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 AIG1P1-201ENST00000503376 148 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 AC008885.1-201ENST00000514930 301 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-1012P-201ENST00000516606 109 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 SNORD59.2-201ENST00000516873 68 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-58P-201ENST00000517143 103 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 RN7SKP57-201ENST00000517248 293 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 MIR5695-201ENST00000579717 85 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 MIR5195-201ENST00000583555 115 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 AC078899.3-201ENST00000599065 212 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 AC011476.5-201ENST00000615594 130 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 MIR7153-201ENST00000637758 57 ntBASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PCIF1Q9H4Z3 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 SNORD114-19-201ENST00000363072 75 ntBASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 RNU1-105P-201ENST00000363470 161 ntBASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 SNORD115-8-201ENST00000363856 82 ntBASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-879P-201ENST00000364328 108 ntBASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 SNORD115-38-201ENST00000365037 82 ntBASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 SNORD78.2-201ENST00000391076 69 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 145.1 ms