Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC090115.3-201ENST00000553218 849 ntBASIC2.64□□□□□ -1.99
CHMP4AQ9BY43 MIR5583-1-201ENST00000580941 59 ntBASIC2.64□□□□□ -1.99
CHMP4AQ9BY43 PIGPP4-201ENST00000584447 307 ntBASIC2.64□□□□□ -1.99
CHMP4AQ9BY43 AC087683.1-201ENST00000591187 441 ntBASIC2.64□□□□□ -1.99
CHMP4AQ9BY43 AL354950.2-201ENST00000617939 290 ntBASIC2.64□□□□□ -1.99
CHMP4AQ9BY43 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.64□□□□□ -1.99
CHMP4AQ9BY43 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
CHMP4AQ9BY43 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 Y_RNA.51-201ENST00000362725 102 ntBASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 AL079342.1-201ENST00000401460 267 ntBASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 AL606923.1-201ENST00000406616 190 ntBASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 RNU4-55P-201ENST00000410731 137 ntBASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 MTCO2P19-201ENST00000427513 598 ntBASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 RNU6-1037P-201ENST00000459571 107 ntBASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 UBL5P3-201ENST00000475112 231 ntBASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 AC108078.1-201ENST00000508073 725 ntBASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 RNU6-85P-201ENST00000605989 107 ntBASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 PCGEM1.1-201ENST00000613431 131 ntBASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
CHMP4AQ9BY43 MIR1261-201ENST00000408659 82 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 ARL5AP1-201ENST00000418991 388 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 AL353193.1-201ENST00000421444 268 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 RPL31P63-201ENST00000422565 375 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 RPL23AP7-203ENST00000449021 469 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 AC073415.1-201ENST00000449240 153 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 AC025033.1-201ENST00000463883 194 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 AC103996.1-201ENST00000555468 102 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 AC109446.1-201ENST00000566172 220 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 MIR5002-201ENST00000584713 97 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 AC103810.8-201ENST00000607347 118 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 AP000553.5-201ENST00000641933 54 ntBASIC2.62□□□□□ -1.99
CHMP4AQ9BY43 Y_RNA.255-201ENST00000364581 97 ntBASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 AC104564.1-201ENST00000493028 407 ntBASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 SNORA31.16-201ENST00000516773 139 ntBASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 RNU1-40P-201ENST00000516816 164 ntBASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 RNU1-97P-201ENST00000516872 164 ntBASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 SUMO2P18-201ENST00000518873 252 ntBASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 NBR2-204ENST00000587322 63 ntBASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 Z98751.3-201ENST00000604447 521 ntBASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 AC073534.2-201ENST00000620377 381 ntBASIC2.61□□□□□ -1.99
CHMP4AQ9BY43 SNORD31B-201ENST00000364977 69 ntBASIC2.6□□□□□ -1.99
CHMP4AQ9BY43 SNORA67.3-201ENST00000384366 140 ntBASIC2.6□□□□□ -1.99
CHMP4AQ9BY43 Y_RNA.481-201ENST00000384373 102 ntBASIC2.6□□□□□ -1.99
CHMP4AQ9BY43 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.6□□□□□ -1.99
CHMP4AQ9BY43 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.6□□□□□ -1.99
CHMP4AQ9BY43 AC007395.1-201ENST00000451333 677 ntBASIC2.6□□□□□ -1.99
CHMP4AQ9BY43 RPL38P4-201ENST00000502376 214 ntBASIC2.6□□□□□ -1.99
CHMP4AQ9BY43 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.6□□□□□ -1.99
CHMP4AQ9BY43 AC087854.1-201ENST00000519706 414 ntBASIC2.6□□□□□ -1.99
CHMP4AQ9BY43 uc_338.20-201ENST00000621563 178 ntBASIC2.6□□□□□ -1.99
CHMP4AQ9BY43 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.6□□□□□ -1.99
CHMP4AQ9BY43 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
CHMP4AQ9BY43 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 SNORA32.2-201ENST00000384049 122 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 RNU6-1026P-201ENST00000384465 108 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 Y_RNA.504-201ENST00000384481 104 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 SNORD37.1-201ENST00000390968 65 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 RNU6-1158P-201ENST00000391167 107 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 AL023284.1-201ENST00000403956 276 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 EBAG9P1-201ENST00000418955 543 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 AL606489.2-201ENST00000433886 234 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 U8.21-201ENST00000459536 136 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 AC007547.1-201ENST00000462177 490 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 AC091885.1-201ENST00000506658 268 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 FAM206BP-201ENST00000510179 541 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 AC091133.4-201ENST00000511142 308 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 RNU5F-4P-201ENST00000516581 114 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 AC025754.2-201ENST00000606491 432 ntBASIC2.59□□□□□ -1.99
CHMP4AQ9BY43 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.59□□□□□ -2
CHMP4AQ9BY43 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.59□□□□□ -2
CHMP4AQ9BY43 AL356292.1-201ENST00000283110 373 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 SNORA12-201ENST00000391162 147 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 AL663109.1-201ENST00000411498 844 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.58□□□□□ -2
CHMP4AQ9BY43 MTCO1P21-201ENST00000416634 589 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.58□□□□□ -2
CHMP4AQ9BY43 FTH1P12-201ENST00000432137 551 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.58□□□□□ -2
CHMP4AQ9BY43 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.58□□□□□ -2
CHMP4AQ9BY43 AC010095.1-201ENST00000443543 144 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 SNORA14.1-201ENST00000516113 141 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 RNU6-189P-201ENST00000516120 101 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 RNU6-405P-201ENST00000516637 110 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.58□□□□□ -2
CHMP4AQ9BY43 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.58□□□□□ -2
CHMP4AQ9BY43 AL158827.2-201ENST00000602494 330 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 AC009994.1-201ENST00000606889 253 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms