Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC099677.2-201ENST00000436385 175 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 MTCYBP39-201ENST00000437562 491 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 AC243964.1-201ENST00000441814 261 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 AC114982.1-201ENST00000469402 321 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 AC005741.1-201ENST00000511094 432 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 AC112206.4-201ENST00000515142 405 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 RNU6-351P-201ENST00000516097 100 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 RNU6-685P-201ENST00000517088 95 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 MIR5692A1-201ENST00000580523 69 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 MIR4999-201ENST00000585029 91 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 VN1R107P-201ENST00000601784 209 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 AC018714.1-201ENST00000605028 208 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 AC009033.1-201ENST00000624279 431 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 Z69720.2-201ENST00000624755 279 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 AC245060.5-201ENST00000610778 3293 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 RNU6-105P-201ENST00000363909 104 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 RNU6-142P-201ENST00000384019 107 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 RNU6-533P-201ENST00000384144 107 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 RNA5SP111-201ENST00000411386 101 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 AC245047.4-201ENST00000433189 144 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 MTND4LP16-201ENST00000440828 295 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 SNRPEP8-201ENST00000442866 260 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 RPL9P9-202ENST00000466501 579 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 AC117522.1-201ENST00000509821 380 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 RNA5SP437-201ENST00000517249 129 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 AC087883.1-201ENST00000551882 391 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 MTATP6P3-201ENST00000581686 676 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 AC105129.3-201ENST00000605455 485 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 RNU6-87P-201ENST00000607561 108 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 AC012676.2-201ENST00000619258 186 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 SNORD98-201ENST00000636377 67 ntBASIC0.92□□□□□ -2.26
CCDC112Q8NEF3 MTCYBP2-201ENST00000407745 171 ntBASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 Y_RNA.608-201ENST00000410647 95 ntBASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 AC119618.1-201ENST00000434191 222 ntBASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 RPS24P1-201ENST00000438550 371 ntBASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 UBL5P1-201ENST00000507979 193 ntBASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 AC092436.3-201ENST00000511788 257 ntBASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 RNU5A-4P-201ENST00000516588 111 ntBASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 AC090888.2-201ENST00000559765 1144 ntBASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 AC015688.6-201ENST00000577737 104 ntBASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 FAM71BP1-201ENST00000604431 523 ntBASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 AL020996.3-201ENST00000606617 222 ntBASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 AP002371.2-201ENST00000624450 503 ntBASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.91□□□□□ -2.26
CCDC112Q8NEF3 AL391516.1-201ENST00000554380 2449 ntBASIC0.9□□□□□ -2.26
CCDC112Q8NEF3 Y_RNA.354-201ENST00000365448 111 ntBASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 MIR520A-201ENST00000384862 85 ntBASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 MIR598-201ENST00000384868 97 ntBASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 MTCO3P41-201ENST00000414801 328 ntBASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 AL606662.1-201ENST00000445763 553 ntBASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 HMGN2P9-201ENST00000476875 229 ntBASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 MTCO3P28-201ENST00000513351 515 ntBASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 MIR3136-201ENST00000583498 78 ntBASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 AC110760.3-201ENST00000598794 467 ntBASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.9□□□□□ -2.27
CCDC112Q8NEF3 AC010615.1-201ENST00000594254 1764 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 Y_RNA.255-201ENST00000364581 97 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 RNU6-641P-201ENST00000384006 107 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 RNU6-43P-201ENST00000384302 107 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 MIR515-2-201ENST00000384883 83 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 MIR515-1-201ENST00000384884 83 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 RNU11-5P-201ENST00000391216 129 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 RNA5SP201-201ENST00000410316 124 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 C1DP2-201ENST00000418167 426 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 FTH1P12-201ENST00000432137 551 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 PRPS1P1-201ENST00000445305 876 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 AL009048.1-201ENST00000450437 298 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 RNA5SP269-201ENST00000459032 137 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 SUMO2P18-201ENST00000518873 252 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 HMGB1P33-201ENST00000563485 527 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 MIR5000-201ENST00000577717 103 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 AC012507.3-201ENST00000603556 477 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 AL031281.1-201ENST00000604049 488 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 AC090578.1-201ENST00000604955 591 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 AC138749.5-201ENST00000611461 208 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms