Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VPS53Q5VIR6 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS53Q5VIR6 SNORA31.18-201ENST00000517043 134 ntBASIC3.2□□□□□ -1.9
VPS53Q5VIR6 AL158827.2-201ENST00000602494 330 ntBASIC3.2□□□□□ -1.9
VPS53Q5VIR6 AC092447.9-201ENST00000603395 144 ntBASIC3.2□□□□□ -1.9
VPS53Q5VIR6 AC009318.2-201ENST00000610917 651 ntBASIC3.2□□□□□ -1.9
VPS53Q5VIR6 AL078596.1-201ENST00000624856 447 ntBASIC3.2□□□□□ -1.9
VPS53Q5VIR6 AL691447.3-201ENST00000635020 330 ntBASIC3.2□□□□□ -1.9
VPS53Q5VIR6 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VPS53Q5VIR6 Y_RNA.48-201ENST00000362710 103 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 SNORD50.1-201ENST00000362987 71 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 RNU6-784P-201ENST00000384330 106 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 Y_RNA.533-201ENST00000384596 114 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 MIR627-201ENST00000384979 97 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AP000275.1-201ENST00000411943 390 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 MRPS18CP6-201ENST00000423587 223 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AL358176.2-201ENST00000425769 204 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 MTND3P9-201ENST00000429526 346 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AL161651.1-201ENST00000440882 223 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 UBBP3-201ENST00000445497 241 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS53Q5VIR6 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.19□□□□□ -1.9
VPS53Q5VIR6 RNU6-1046P-201ENST00000516538 107 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 MIR5701-3-201ENST00000578890 82 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AC103810.1-201ENST00000579873 453 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 MIR5701-1-201ENST00000585138 82 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AL391813.1-201ENST00000603098 260 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AP000942.4-201ENST00000604811 241 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 MIR5701-2-201ENST00000615634 82 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS53Q5VIR6 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AL606534.2-204ENST00000635008 178 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AC005592.1-201ENST00000566527 1640 ntBASIC3.19□□□□□ -1.9
VPS53Q5VIR6 AC004944.1-201ENST00000517807 3059 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
VPS53Q5VIR6 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
VPS53Q5VIR6 Y_RNA.39-201ENST00000362620 98 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 Y_RNA.133-201ENST00000363428 110 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 RNU6-595P-201ENST00000363944 107 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 RNU6-99P-201ENST00000364721 107 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 RNU6-1105P-201ENST00000384774 107 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 MIR592-201ENST00000384959 97 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 MIR9-1-201ENST00000385198 89 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 RNU2-23P-201ENST00000410545 195 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS53Q5VIR6 AC079354.2-201ENST00000453523 154 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 RPL23AP49-201ENST00000492925 468 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS53Q5VIR6 RNU5F-8P-201ENST00000515941 111 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 RNU6-764P-201ENST00000516396 105 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 RNU4-77P-201ENST00000516692 156 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 RNU7-4P-201ENST00000516961 62 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 CR383656.8-201ENST00000549046 145 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 MIR4635-201ENST00000583759 79 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 HMGB1P24-202ENST00000615653 685 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 AL138825.1-201ENST00000618587 192 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 AL162373.1-201ENST00000620433 407 ntBASIC3.18□□□□□ -1.9
VPS53Q5VIR6 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS53Q5VIR6 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS53Q5VIR6 RNU6-527P-201ENST00000363425 104 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 RNU6-1180P-201ENST00000364935 107 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 RNU6-1083P-201ENST00000384022 107 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 FO393413.1-201ENST00000402892 195 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 RNU6-1156P-201ENST00000410365 100 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS53Q5VIR6 MTCYBP10-201ENST00000424905 650 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 AL109933.2-201ENST00000452651 260 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS53Q5VIR6 RPL30P10-201ENST00000488148 337 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 AC021146.2-201ENST00000504736 556 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 AC105758.1-201ENST00000506038 399 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 Y_RNA.721-201ENST00000517207 102 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 COX6CP5-201ENST00000527162 228 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.17□□□□□ -1.9
VPS53Q5VIR6 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS53Q5VIR6 AL117187.1-201ENST00000555482 181 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS53Q5VIR6 MIR7515-201ENST00000637837 67 ntBASIC3.17□□□□□ -1.9
VPS53Q5VIR6 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.17□□□□□ -1.9
VPS53Q5VIR6 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
VPS53Q5VIR6 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS53Q5VIR6 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 Y_RNA.144-201ENST00000363521 113 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 SNORD56.5-201ENST00000364281 72 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 Y_RNA.314-201ENST00000365114 102 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 Y_RNA.455-201ENST00000384230 98 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 RNU6-19P-201ENST00000384718 107 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 Y_RNA.645-201ENST00000391229 102 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 BTF3L4P2-201ENST00000392798 346 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 MIR548F4-201ENST00000408515 105 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 AL591043.1-201ENST00000432461 424 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS53Q5VIR6 RPS15AP7-201ENST00000439294 405 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 AC112492.4-201ENST00000456549 352 ntBASIC3.16□□□□□ -1.9
VPS53Q5VIR6 GZMAP1-201ENST00000503054 631 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms