Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC091874.1-201ENST00000511402 339 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 RNA5SP490-201ENST00000517141 136 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 MTND4P7-201ENST00000523876 130 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 AK6P1-201ENST00000540219 478 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 AC006362.1-201ENST00000567392 174 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 AC022254.1-201ENST00000567857 235 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 AC078795.3-201ENST00000602913 472 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 AC012507.3-201ENST00000603556 477 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 AP001836.1-201ENST00000604675 523 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 HULC.1-201ENST00000612720 240 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 Y_RNA.1-201ENST00000352915 104 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 RNU6-23P-201ENST00000363283 107 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 RNU4-56P-201ENST00000364700 142 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 Y_RNA.296-201ENST00000364930 108 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 Y_RNA.359-201ENST00000365498 102 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 RNA5SP201-201ENST00000410316 124 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 VN1R36P-201ENST00000414936 291 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 CDK8P2-201ENST00000415020 547 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 MTCO2P16-201ENST00000436962 677 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 AC108078.1-201ENST00000508073 725 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 AC079140.3-201ENST00000511111 550 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 MIR4424-201ENST00000585257 86 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 AC103810.8-201ENST00000607347 118 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 MIR8081-201ENST00000611533 95 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 AC090582.1-201ENST00000636321 199 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 AL450472.1-202ENST00000637286 180 ntBASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
CCDC40Q4G0X9 AC092268.1-201ENST00000342691 405 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 RNA5SP493-201ENST00000364115 91 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 SNORD114-6-201ENST00000364393 72 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 RNU6-160P-201ENST00000384591 107 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 AL033519.2-201ENST00000403958 392 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 AL606923.1-201ENST00000406616 190 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 MTCO2P18-201ENST00000457151 658 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 snoU13.15-201ENST00000459407 104 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 AC016632.1-201ENST00000503994 196 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 CBX3P4-201ENST00000538909 354 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 HSBP1P1-201ENST00000555205 166 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 AC109446.1-201ENST00000566172 220 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 MIR3923-201ENST00000579521 83 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 MIR6845-201ENST00000613182 61 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 AL590240.4-201ENST00000616908 390 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 AC130454.1-201ENST00000622948 401 ntBASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CCDC40Q4G0X9 Y_RNA.255-201ENST00000364581 97 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 Y_RNA.332-201ENST00000365271 113 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 U8.13-201ENST00000390842 128 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 RNA5SP219-201ENST00000390940 113 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 AL606489.2-201ENST00000433886 234 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 AL121601.2-201ENST00000438019 707 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 AL035666.1-201ENST00000446195 348 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 AC098826.2-201ENST00000452011 651 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 TPT1P7-201ENST00000458300 517 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 AC091133.4-201ENST00000511142 308 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 MIR3169-201ENST00000578032 83 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 AC087683.1-201ENST00000591187 441 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 AL158827.2-201ENST00000602494 330 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 PCGEM1.1-201ENST00000613431 131 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 AC022079.1-201ENST00000621546 602 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 AL691447.3-201ENST00000635020 330 ntBASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
CCDC40Q4G0X9 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 AL356292.1-201ENST00000283110 373 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 RNU4-42P-201ENST00000364738 142 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 Y_RNA.504-201ENST00000384481 104 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 RNY3P9-201ENST00000384727 106 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 SNORD73A-201ENST00000386062 65 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 SNORA48.1-201ENST00000390879 135 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 Y_RNA.582-201ENST00000391023 95 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 DEFB108C-201ENST00000400154 252 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 AC009310.1-201ENST00000414414 451 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 FTH1P25-201ENST00000447665 469 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 RNU7-138P-201ENST00000459479 64 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 RNVU1-2-201ENST00000516326 135 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 SNORA40.12-201ENST00000516329 111 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 RNU6-250P-201ENST00000516958 103 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 AC087441.2-201ENST00000529141 262 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 VN1R80P-201ENST00000597126 338 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 Z98751.3-201ENST00000604447 521 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 AC068944.2-201ENST00000610373 403 ntBASIC1.81□□□□□ -2.12
CCDC40Q4G0X9 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms