Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MIR3136-201ENST00000583498 78 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 AL356575.1-201ENST00000603008 283 ntBASIC2.56□□□□□ -2
COL28A1Q2UY09 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
COL28A1Q2UY09 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
COL28A1Q2UY09 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.55□□□□□ -2
COL28A1Q2UY09 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.55□□□□□ -2
COL28A1Q2UY09 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
COL28A1Q2UY09 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.55□□□□□ -2
COL28A1Q2UY09 RNU6-212P-201ENST00000362642 104 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 Y_RNA.140-201ENST00000363474 103 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 Y_RNA.151-201ENST00000363566 112 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 SNORD56.5-201ENST00000364281 72 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 U8.8-201ENST00000365399 135 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 MIR218-1-201ENST00000384999 110 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 MIR27B-201ENST00000385129 97 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.55□□□□□ -2
COL28A1Q2UY09 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL28A1Q2UY09 MIR548F5-201ENST00000408421 86 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 RNA5SP492-201ENST00000411330 114 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.55□□□□□ -2
COL28A1Q2UY09 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.55□□□□□ -2
COL28A1Q2UY09 EIF1AXP1-201ENST00000419267 435 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.55□□□□□ -2
COL28A1Q2UY09 AC244670.1-201ENST00000436879 112 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.55□□□□□ -2
COL28A1Q2UY09 AC003982.1-202ENST00000469928 248 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 RPS27P27-201ENST00000498779 255 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 AC016632.1-201ENST00000503994 196 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 AC116337.1-201ENST00000509680 687 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 RNA5SP445-201ENST00000515889 115 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 ZNF861P-201ENST00000588126 639 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.55□□□□□ -2
COL28A1Q2UY09 AC046143.2-201ENST00000609789 160 ntBASIC2.55□□□□□ -2
COL28A1Q2UY09 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.55□□□□□ -2
COL28A1Q2UY09 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
COL28A1Q2UY09 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.55□□□□□ -2
COL28A1Q2UY09 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.54□□□□□ -2
COL28A1Q2UY09 MTND4P12-201ENST00000498999 1377 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.54□□□□□ -2
COL28A1Q2UY09 Y_RNA.466-201ENST00000384294 113 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 RNU6-784P-201ENST00000384330 106 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.54□□□□□ -2
COL28A1Q2UY09 RNU6-1009P-201ENST00000390996 107 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 AL079342.1-201ENST00000401460 267 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.54□□□□□ -2
COL28A1Q2UY09 DPH3P2-201ENST00000422618 250 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.54□□□□□ -2
COL28A1Q2UY09 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.54□□□□□ -2
COL28A1Q2UY09 AIG1P1-201ENST00000503376 148 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 FGF7P4-201ENST00000509595 295 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.54□□□□□ -2
COL28A1Q2UY09 SNORA25.11-201ENST00000515935 105 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 SNORA31.15-201ENST00000516771 132 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 RNU1-54P-201ENST00000517181 120 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.54□□□□□ -2
COL28A1Q2UY09 AC105029.1-201ENST00000520250 669 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.54□□□□□ -2
COL28A1Q2UY09 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.54□□□□□ -2
COL28A1Q2UY09 HSPE1P20-201ENST00000538133 289 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 HSPE1P4-201ENST00000550617 308 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 LARP7P1-201ENST00000605576 316 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.54□□□□□ -2
COL28A1Q2UY09 AC019193.3-201ENST00000609144 554 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 AC104260.1-201ENST00000616660 539 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 AC010297.1-201ENST00000623948 149 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 AC099654.5-201ENST00000636479 350 ntBASIC2.54□□□□□ -2
COL28A1Q2UY09 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.54□□□□□ -2
COL28A1Q2UY09 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.53□□□□□ -2
COL28A1Q2UY09 MIR26A1-201ENST00000362205 77 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 Y_RNA.263-201ENST00000364659 114 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 Y_RNA.482-201ENST00000384377 111 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 RNU6-790P-201ENST00000384479 105 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 Y_RNA.508-201ENST00000384502 114 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 MIR95-201ENST00000385072 81 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 AL356057.3-201ENST00000402607 340 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 RPL37P10-201ENST00000412884 288 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.53□□□□□ -2
COL28A1Q2UY09 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.53□□□□□ -2
COL28A1Q2UY09 MTND3P9-201ENST00000429526 346 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 RPS3AP52-201ENST00000435639 297 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.53□□□□□ -2
COL28A1Q2UY09 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.53□□□□□ -2
COL28A1Q2UY09 SNORD5.1-201ENST00000458800 75 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.53□□□□□ -2
COL28A1Q2UY09 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.53□□□□□ -2
COL28A1Q2UY09 RN7SKP24-201ENST00000515888 284 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 ACA59.1-201ENST00000515966 143 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 RNU5F-2P-201ENST00000516066 82 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 RNU6-1016P-201ENST00000516689 94 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 MIR5571-201ENST00000577998 113 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.53□□□□□ -2
COL28A1Q2UY09 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.53□□□□□ -2
COL28A1Q2UY09 POLR3GP2-201ENST00000588366 668 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.53□□□□□ -2
COL28A1Q2UY09 AC009541.1-201ENST00000438279 2662 ntBASIC2.53□□□□□ -2.01
COL28A1Q2UY09 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2.01
COL28A1Q2UY09 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
COL28A1Q2UY09 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
COL28A1Q2UY09 SNORD114-1-201ENST00000362705 72 ntBASIC2.52□□□□□ -2.01
COL28A1Q2UY09 RNU1-109P-201ENST00000383960 147 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms