Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.65□□□□□ -1.82
SF3A1Q15459 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.65□□□□□ -1.82
SF3A1Q15459 Y_RNA.106-201ENST00000363189 100 ntBASIC3.65□□□□□ -1.83
SF3A1Q15459 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
SF3A1Q15459 U8.10-201ENST00000384260 133 ntBASIC3.65□□□□□ -1.83
SF3A1Q15459 Y_RNA.597-201ENST00000410463 100 ntBASIC3.65□□□□□ -1.83
SF3A1Q15459 Y_RNA.605-201ENST00000410577 105 ntBASIC3.65□□□□□ -1.83
SF3A1Q15459 RPS26P42-201ENST00000413485 326 ntBASIC3.65□□□□□ -1.83
SF3A1Q15459 AC005534.2-201ENST00000431047 433 ntBASIC3.65□□□□□ -1.83
SF3A1Q15459 AC009969.1-201ENST00000438726 172 ntBASIC3.65□□□□□ -1.83
SF3A1Q15459 AL137792.2-201ENST00000443484 235 ntBASIC3.65□□□□□ -1.83
SF3A1Q15459 EEF1B2P7-201ENST00000451177 676 ntBASIC3.65□□□□□ -1.83
SF3A1Q15459 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.65□□□□□ -1.83
SF3A1Q15459 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.65□□□□□ -1.83
SF3A1Q15459 MIR4719-201ENST00000585233 84 ntBASIC3.65□□□□□ -1.83
SF3A1Q15459 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.65□□□□□ -1.83
SF3A1Q15459 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.64□□□□□ -1.83
SF3A1Q15459 Y_RNA.112-201ENST00000363250 102 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 Y_RNA.252-201ENST00000364556 101 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 RNA5SP240-201ENST00000365355 128 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.64□□□□□ -1.83
SF3A1Q15459 USP9YP16-201ENST00000430287 407 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.64□□□□□ -1.83
SF3A1Q15459 AL161788.1-201ENST00000441805 169 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 AC104389.3-201ENST00000445629 235 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 AL035666.1-201ENST00000446195 348 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.64□□□□□ -1.83
SF3A1Q15459 USP9YP23-201ENST00000455085 407 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.64□□□□□ -1.83
SF3A1Q15459 AC144568.1-201ENST00000520139 137 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 EIF4A1P12-201ENST00000551910 141 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.64□□□□□ -1.83
SF3A1Q15459 AL355297.2-201ENST00000604792 129 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 AC005000.2-201ENST00000605468 310 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 AC006157.1-201ENST00000611750 366 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 uc_338.25-201ENST00000613756 156 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 AC005520.5-201ENST00000613926 164 ntBASIC3.64□□□□□ -1.83
SF3A1Q15459 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SF3A1Q15459 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.64□□□□□ -1.83
SF3A1Q15459 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
SF3A1Q15459 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SF3A1Q15459 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
SF3A1Q15459 RNU6-874P-201ENST00000362390 105 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 RNU6-222P-201ENST00000362438 107 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 RNY3P11-201ENST00000364153 102 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 SNORA69.1-201ENST00000390904 137 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 AL445305.1-201ENST00000432577 575 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.63□□□□□ -1.83
SF3A1Q15459 AP000870.1-201ENST00000472927 406 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 RNA5SP385-201ENST00000515947 110 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 RN7SKP295-201ENST00000517264 153 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.63□□□□□ -1.83
SF3A1Q15459 AC090517.1-201ENST00000569307 266 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 MIR3171-201ENST00000584270 74 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 AC078899.3-201ENST00000599065 212 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 AC092447.9-201ENST00000603395 144 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 MIR3651-201ENST00000630427 90 ntBASIC3.63□□□□□ -1.83
SF3A1Q15459 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SF3A1Q15459 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SF3A1Q15459 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.63□□□□□ -1.83
SF3A1Q15459 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
SF3A1Q15459 MTND5P16-201ENST00000460269 1703 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.62□□□□□ -1.83
SF3A1Q15459 Y_RNA.31-201ENST00000362574 102 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 Y_RNA.111-201ENST00000363248 100 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 RNU6-944P-201ENST00000364023 107 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 RNA5SP125-201ENST00000364843 120 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 Y_RNA.358-201ENST00000365491 99 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 Y_RNA.364-201ENST00000365532 101 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 RNU6-1227P-201ENST00000383981 107 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 Y_RNA.496-201ENST00000384444 101 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 MIR628-201ENST00000385229 95 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 MIR549A-201ENST00000385268 96 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.62□□□□□ -1.83
SF3A1Q15459 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.62□□□□□ -1.83
SF3A1Q15459 GSTA11P-201ENST00000452866 669 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 RPS29P2-201ENST00000479278 136 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 AC090096.1-201ENST00000489168 390 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.62□□□□□ -1.83
SF3A1Q15459 RNU6-1198P-201ENST00000516904 67 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.62□□□□□ -1.83
SF3A1Q15459 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.62□□□□□ -1.83
SF3A1Q15459 AC020661.2-201ENST00000560114 134 ntBASIC3.62□□□□□ -1.83
SF3A1Q15459 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.62□□□□□ -1.83
SF3A1Q15459 SNORA63-201ENST00000363450 132 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.61□□□□□ -1.83
SF3A1Q15459 AL357075.1-201ENST00000404107 726 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 AC018865.2-201ENST00000423631 129 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 AC096644.2-201ENST00000429278 159 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 Z75741.1-201ENST00000446793 314 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 AC103975.1-201ENST00000482506 483 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 ANXA2P1-201ENST00000505539 926 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 RN7SKP57-201ENST00000517248 293 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 AC027288.2-201ENST00000553028 243 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 SNRPGP17-201ENST00000603780 214 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 AC016727.2-201ENST00000603988 621 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 AC007485.1-201ENST00000616755 206 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 AL449363.1-201ENST00000617815 186 ntBASIC3.61□□□□□ -1.83
SF3A1Q15459 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.61□□□□□ -1.83
SF3A1Q15459 ZNF204P-201ENST00000416749 2397 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms