Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A3Q01955 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A3Q01955 CST9LP2-201ENST00000437612 320 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 RPS4XP13-201ENST00000483219 789 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 SNORA43.2-201ENST00000516652 128 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 AF186190.1-201ENST00000517470 480 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.14□□□□□ -1.91
COL4A3Q01955 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.14□□□□□ -1.91
COL4A3Q01955 AC025946.2-201ENST00000603398 234 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 RPL23AP88-201ENST00000605759 454 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
COL4A3Q01955 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
COL4A3Q01955 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
COL4A3Q01955 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A3Q01955 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
COL4A3Q01955 Y_RNA.44-201ENST00000362676 108 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 RNU6-879P-201ENST00000364328 108 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 RNU6-140P-201ENST00000384566 108 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 RNU5A-5P-201ENST00000411054 116 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.14□□□□□ -1.91
COL4A3Q01955 AC243964.1-201ENST00000441814 261 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 HMGN2P7-201ENST00000456186 273 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 RPL36AP21-201ENST00000490372 323 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A3Q01955 SNORA25.14-201ENST00000516481 132 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 AP002392.1-201ENST00000537692 208 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 MIR3910-1-201ENST00000580936 111 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A3Q01955 SNORD113-5-201ENST00000607261 78 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 AC241585.2-209ENST00000638217 143 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL4A3Q01955 Y_RNA.4-201ENST00000362333 112 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 RNU6-843P-201ENST00000384454 104 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 RNA5SP184-201ENST00000411071 108 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 EIF1AXP1-201ENST00000419267 435 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 EIF1P2-201ENST00000428233 350 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.13□□□□□ -1.91
COL4A3Q01955 AL353705.4-201ENST00000449661 238 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.13□□□□□ -1.91
COL4A3Q01955 HSPE1P25-201ENST00000455484 251 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 AC006026.2-201ENST00000457376 180 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 RNU7-120P-201ENST00000459334 63 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL4A3Q01955 RNU6-1282P-201ENST00000516735 96 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 AC087441.2-201ENST00000529141 262 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.13□□□□□ -1.91
COL4A3Q01955 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.13□□□□□ -1.91
COL4A3Q01955 SCARNA4-201ENST00000629045 128 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 MIR622-201ENST00000638396 96 ntBASIC3.13□□□□□ -1.91
COL4A3Q01955 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL4A3Q01955 HAUS6P2-201ENST00000433254 2404 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 Y_RNA.76-201ENST00000362931 109 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 RNU6-1286P-201ENST00000383871 107 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 RNU6-926P-201ENST00000384075 107 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 RNU6-968P-201ENST00000384076 107 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 MIR325-201ENST00000385260 98 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 PCNPP3-201ENST00000393579 471 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 RNU6-1245P-201ENST00000411130 106 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 WARS2P1-201ENST00000429678 537 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 RPS15AP7-201ENST00000439294 405 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 Z82210.1-201ENST00000440037 231 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 IFNA11P-201ENST00000446352 526 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 snoU13.23-201ENST00000458863 104 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 RNU6-1183P-201ENST00000517054 60 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.12□□□□□ -1.91
COL4A3Q01955 AC010620.2-201ENST00000600135 313 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 FTX_3.1-201ENST00000610451 147 ntBASIC3.12□□□□□ -1.91
COL4A3Q01955 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL4A3Q01955 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.12□□□□□ -1.91
COL4A3Q01955 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
COL4A3Q01955 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL4A3Q01955 RNU6-222P-201ENST00000362438 107 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 RNU6-942P-201ENST00000363002 107 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 RNU6-290P-201ENST00000365212 101 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 RNU6-326P-201ENST00000365480 107 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 RNU6-142P-201ENST00000384019 107 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 RNU6-187P-201ENST00000384139 106 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 RNU6-318P-201ENST00000384283 103 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 MIR153-2-201ENST00000385225 87 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 AL031659.1-201ENST00000447075 539 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 RPL23AP14-201ENST00000468281 468 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.11□□□□□ -1.91
COL4A3Q01955 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A3Q01955 RNA5SP367-201ENST00000516557 118 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 CBX3P4-201ENST00000538909 354 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 Z83818.1-201ENST00000603584 150 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A3Q01955 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL4A3Q01955 MIR22-201ENST00000362190 85 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 MIR411-201ENST00000362239 96 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 SNORD115-32-201ENST00000364079 82 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 RNY4P28-201ENST00000365281 93 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 U3.15-201ENST00000365398 212 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A3Q01955 RNU6-102P-201ENST00000384485 104 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms