Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SNORA67.5-201ENST00000391036 107 ntBASIC1.5□□□□□ -2.17
RFX3P48380 RN7SKP61-201ENST00000410642 295 ntBASIC1.5□□□□□ -2.17
RFX3P48380 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.5□□□□□ -2.17
RFX3P48380 AL117339.3-201ENST00000418733 162 ntBASIC1.5□□□□□ -2.17
RFX3P48380 AL358934.1-201ENST00000432346 324 ntBASIC1.5□□□□□ -2.17
RFX3P48380 USP9YP29-201ENST00000445112 563 ntBASIC1.5□□□□□ -2.17
RFX3P48380 AL035666.1-201ENST00000446195 348 ntBASIC1.5□□□□□ -2.17
RFX3P48380 RNU7-167P-201ENST00000459160 62 ntBASIC1.5□□□□□ -2.17
RFX3P48380 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.5□□□□□ -2.17
RFX3P48380 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.5□□□□□ -2.17
RFX3P48380 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.5□□□□□ -2.17
RFX3P48380 AC022880.1-201ENST00000534017 973 ntBASIC1.5□□□□□ -2.17
RFX3P48380 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.5□□□□□ -2.17
RFX3P48380 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC1.5□□□□□ -2.17
RFX3P48380 TRAV32-201ENST00000553993 340 ntBASIC1.5□□□□□ -2.17
RFX3P48380 AGGF1P4-201ENST00000568249 801 ntBASIC1.5□□□□□ -2.17
RFX3P48380 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.5□□□□□ -2.17
RFX3P48380 AL590240.4-201ENST00000616908 390 ntBASIC1.5□□□□□ -2.17
RFX3P48380 AC136475.10-201ENST00000620253 385 ntBASIC1.5□□□□□ -2.17
RFX3P48380 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.5□□□□□ -2.17
RFX3P48380 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
RFX3P48380 MIR424-201ENST00000362227 98 ntBASIC1.49□□□□□ -2.17
RFX3P48380 RNU6-552P-201ENST00000362869 119 ntBASIC1.49□□□□□ -2.17
RFX3P48380 RNU6-266P-201ENST00000364225 107 ntBASIC1.49□□□□□ -2.17
RFX3P48380 RNA5SP190-201ENST00000365222 118 ntBASIC1.49□□□□□ -2.17
RFX3P48380 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
RFX3P48380 RNU6-439P-201ENST00000384188 106 ntBASIC1.49□□□□□ -2.17
RFX3P48380 RNU6-43P-201ENST00000384302 107 ntBASIC1.49□□□□□ -2.17
RFX3P48380 SNORA12-201ENST00000391162 147 ntBASIC1.49□□□□□ -2.17
RFX3P48380 AL357139.1-201ENST00000407792 426 ntBASIC1.49□□□□□ -2.17
RFX3P48380 POLHP1-201ENST00000411806 470 ntBASIC1.49□□□□□ -2.17
RFX3P48380 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.49□□□□□ -2.17
RFX3P48380 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC1.49□□□□□ -2.17
RFX3P48380 AC010975.2-201ENST00000427781 588 ntBASIC1.49□□□□□ -2.17
RFX3P48380 CETN4P-201ENST00000432407 469 ntBASIC1.49□□□□□ -2.17
RFX3P48380 AC244670.1-201ENST00000436879 112 ntBASIC1.49□□□□□ -2.17
RFX3P48380 HMGB1P18-201ENST00000438801 619 ntBASIC1.49□□□□□ -2.17
RFX3P48380 AC098826.2-201ENST00000452011 651 ntBASIC1.49□□□□□ -2.17
RFX3P48380 RNU6-956P-201ENST00000458868 103 ntBASIC1.49□□□□□ -2.17
RFX3P48380 SNORD13-201ENST00000459299 104 ntBASIC1.49□□□□□ -2.17
RFX3P48380 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.49□□□□□ -2.17
RFX3P48380 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.49□□□□□ -2.17
RFX3P48380 AC016727.1-205ENST00000605437 569 ntBASIC1.49□□□□□ -2.17
RFX3P48380 AC123912.5-201ENST00000605470 343 ntBASIC1.49□□□□□ -2.17
RFX3P48380 U2.17-201ENST00000611454 95 ntBASIC1.49□□□□□ -2.17
RFX3P48380 RMST_6.1-201ENST00000611980 203 ntBASIC1.49□□□□□ -2.17
RFX3P48380 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.49□□□□□ -2.17
RFX3P48380 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.49□□□□□ -2.17
RFX3P48380 Z69908.1-201ENST00000622603 247 ntBASIC1.49□□□□□ -2.17
RFX3P48380 SNORD98-201ENST00000636377 67 ntBASIC1.49□□□□□ -2.17
RFX3P48380 CBX3P1-201ENST00000325243 554 ntBASIC1.48□□□□□ -2.17
RFX3P48380 AC092268.1-201ENST00000342691 405 ntBASIC1.48□□□□□ -2.17
RFX3P48380 RNU6-428P-201ENST00000362942 107 ntBASIC1.48□□□□□ -2.17
RFX3P48380 Y_RNA.159-201ENST00000363674 87 ntBASIC1.48□□□□□ -2.17
RFX3P48380 SNORD32B-201ENST00000364460 84 ntBASIC1.48□□□□□ -2.17
RFX3P48380 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.48□□□□□ -2.17
RFX3P48380 AC090960.1-201ENST00000421072 306 ntBASIC1.48□□□□□ -2.17
RFX3P48380 MTCO2P34-201ENST00000421994 607 ntBASIC1.48□□□□□ -2.17
RFX3P48380 AC073464.1-201ENST00000429823 534 ntBASIC1.48□□□□□ -2.17
RFX3P48380 SNAP23P1-201ENST00000433229 246 ntBASIC1.48□□□□□ -2.17
RFX3P48380 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.48□□□□□ -2.17
RFX3P48380 RNU1-98P-201ENST00000458992 160 ntBASIC1.48□□□□□ -2.17
RFX3P48380 RNU7-63P-201ENST00000459054 62 ntBASIC1.48□□□□□ -2.17
RFX3P48380 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.48□□□□□ -2.17
RFX3P48380 AC027575.1-201ENST00000481064 460 ntBASIC1.48□□□□□ -2.17
RFX3P48380 AC023790.1-201ENST00000482174 347 ntBASIC1.48□□□□□ -2.17
RFX3P48380 AC021146.2-201ENST00000504736 556 ntBASIC1.48□□□□□ -2.17
RFX3P48380 RNU6-970P-201ENST00000516312 107 ntBASIC1.48□□□□□ -2.17
RFX3P48380 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.48□□□□□ -2.17
RFX3P48380 AC002044.1-201ENST00000606707 158 ntBASIC1.48□□□□□ -2.17
RFX3P48380 AC068944.2-201ENST00000610373 403 ntBASIC1.48□□□□□ -2.17
RFX3P48380 MIR3974-201ENST00000637126 96 ntBASIC1.48□□□□□ -2.17
RFX3P48380 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
RFX3P48380 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.47□□□□□ -2.17
RFX3P48380 AP000568.1-201ENST00000282964 442 ntBASIC1.47□□□□□ -2.17
RFX3P48380 Y_RNA.77-201ENST00000362962 107 ntBASIC1.47□□□□□ -2.17
RFX3P48380 RNU6-996P-201ENST00000365438 107 ntBASIC1.47□□□□□ -2.17
RFX3P48380 RNU6-338P-201ENST00000383888 105 ntBASIC1.47□□□□□ -2.17
RFX3P48380 SNORA75-201ENST00000384158 137 ntBASIC1.47□□□□□ -2.17
RFX3P48380 RNU6-692P-201ENST00000384496 107 ntBASIC1.47□□□□□ -2.17
RFX3P48380 RNU6-160P-201ENST00000384591 107 ntBASIC1.47□□□□□ -2.17
RFX3P48380 RNU6-997P-201ENST00000384725 107 ntBASIC1.47□□□□□ -2.17
RFX3P48380 MIR934-201ENST00000401241 83 ntBASIC1.47□□□□□ -2.17
RFX3P48380 MTCYBP2-201ENST00000407745 171 ntBASIC1.47□□□□□ -2.17
RFX3P48380 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.47□□□□□ -2.17
RFX3P48380 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
RFX3P48380 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.47□□□□□ -2.17
RFX3P48380 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.47□□□□□ -2.17
RFX3P48380 AL513185.2-201ENST00000425543 193 ntBASIC1.47□□□□□ -2.17
RFX3P48380 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC1.47□□□□□ -2.17
RFX3P48380 RPL23AP95-201ENST00000426806 265 ntBASIC1.47□□□□□ -2.17
RFX3P48380 AL133396.1-201ENST00000432048 687 ntBASIC1.47□□□□□ -2.17
RFX3P48380 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.47□□□□□ -2.17
RFX3P48380 HMGN2P18-201ENST00000450680 270 ntBASIC1.47□□□□□ -2.17
RFX3P48380 AC010409.1-201ENST00000487382 476 ntBASIC1.47□□□□□ -2.17
RFX3P48380 AC145146.1-201ENST00000496370 254 ntBASIC1.47□□□□□ -2.17
RFX3P48380 AK3P2-201ENST00000507976 429 ntBASIC1.47□□□□□ -2.17
RFX3P48380 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.47□□□□□ -2.17
RFX3P48380 RN7SKP298-201ENST00000515950 94 ntBASIC1.47□□□□□ -2.17
RFX3P48380 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms