Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AC104564.1-201ENST00000493028 407 ntBASIC2.2□□□□□ -2.06
NKX2-1P43699 CKS1BP2-201ENST00000497342 240 ntBASIC2.2□□□□□ -2.06
NKX2-1P43699 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.2□□□□□ -2.06
NKX2-1P43699 AC083906.5-201ENST00000503722 328 ntBASIC2.2□□□□□ -2.06
NKX2-1P43699 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.2□□□□□ -2.06
NKX2-1P43699 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.2□□□□□ -2.06
NKX2-1P43699 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.2□□□□□ -2.06
NKX2-1P43699 Y_RNA.675-201ENST00000516389 149 ntBASIC2.2□□□□□ -2.06
NKX2-1P43699 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.2□□□□□ -2.06
NKX2-1P43699 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.2□□□□□ -2.06
NKX2-1P43699 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.2□□□□□ -2.06
NKX2-1P43699 AC021231.3-201ENST00000558497 370 ntBASIC2.2□□□□□ -2.06
NKX2-1P43699 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.2□□□□□ -2.06
NKX2-1P43699 AL670379.2-201ENST00000604983 252 ntBASIC2.2□□□□□ -2.06
NKX2-1P43699 MIR3976-201ENST00000606807 139 ntBASIC2.2□□□□□ -2.06
NKX2-1P43699 PISRT1.1-201ENST00000616930 107 ntBASIC2.2□□□□□ -2.06
NKX2-1P43699 AC137590.2-201ENST00000619709 240 ntBASIC2.2□□□□□ -2.06
NKX2-1P43699 AC010297.1-201ENST00000623948 149 ntBASIC2.2□□□□□ -2.06
NKX2-1P43699 AL669831.3-213ENST00000636676 183 ntBASIC2.2□□□□□ -2.06
NKX2-1P43699 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.2□□□□□ -2.06
NKX2-1P43699 ZNF299P-201ENST00000406845 1804 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 AC006026.1-201ENST00000444025 1803 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.19□□□□□ -2.06
NKX2-1P43699 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
NKX2-1P43699 MTND5P9-201ENST00000503854 1755 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.19□□□□□ -2.06
NKX2-1P43699 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
NKX2-1P43699 SNORD115-32-201ENST00000364079 82 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 SNORD46.1-201ENST00000364139 104 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 Y_RNA.259-201ENST00000364619 101 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 RNA5SP125-201ENST00000364843 120 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 MIR561-201ENST00000385216 97 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 RNA5SP210-201ENST00000391034 120 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 AL139095.1-201ENST00000404326 391 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 RNA5SP181-201ENST00000410246 98 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 Y_RNA.646-201ENST00000410980 101 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.19□□□□□ -2.06
NKX2-1P43699 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.19□□□□□ -2.06
NKX2-1P43699 RN7SKP210-201ENST00000459176 261 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 HMGB1P35-201ENST00000503360 598 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.19□□□□□ -2.06
NKX2-1P43699 RNU5F-2P-201ENST00000516066 82 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 RNU6-586P-201ENST00000517265 104 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.19□□□□□ -2.06
NKX2-1P43699 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.19□□□□□ -2.06
NKX2-1P43699 AC018630.3-201ENST00000542637 96 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 AC093249.1-201ENST00000567049 203 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.19□□□□□ -2.06
NKX2-1P43699 BNIP3P22-201ENST00000593399 556 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 RPL12P50-201ENST00000603116 116 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 AC007179.3-201ENST00000604976 235 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 HMGB1P24-202ENST00000615653 685 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 AC090574.1-201ENST00000623186 233 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 AC091925.1-201ENST00000623204 462 ntBASIC2.19□□□□□ -2.06
NKX2-1P43699 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.19□□□□□ -2.06
NKX2-1P43699 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
NKX2-1P43699 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.18□□□□□ -2.06
NKX2-1P43699 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.18□□□□□ -2.06
NKX2-1P43699 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
NKX2-1P43699 Y_RNA.112-201ENST00000363250 102 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 RNU4-56P-201ENST00000364700 142 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 RNU6-306P-201ENST00000384617 107 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 MIR521-1-201ENST00000384902 87 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
NKX2-1P43699 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 AC006946.1-201ENST00000429106 328 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 MTND3P9-201ENST00000429526 346 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 AC090515.1-201ENST00000465295 476 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.18□□□□□ -2.06
NKX2-1P43699 AC090096.1-201ENST00000489168 390 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.18□□□□□ -2.06
NKX2-1P43699 SLC25A15P5-201ENST00000508033 253 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 SNORA74D-201ENST00000516404 141 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 RNU6-567P-201ENST00000516746 107 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.18□□□□□ -2.06
NKX2-1P43699 AC104581.2-201ENST00000572227 430 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 MIR4273-201ENST00000582824 84 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 MIR5195-201ENST00000583555 115 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 MIR4635-201ENST00000583759 79 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.18□□□□□ -2.06
NKX2-1P43699 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.18□□□□□ -2.06
NKX2-1P43699 AL355297.2-201ENST00000604792 129 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 AC096577.2-201ENST00000611455 153 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 MIR8057-201ENST00000620957 69 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 SCARNA4-201ENST00000629045 128 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
NKX2-1P43699 Z82209.1-201ENST00000422141 2135 ntBASIC2.18□□□□□ -2.06
NKX2-1P43699 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
NKX2-1P43699 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
NKX2-1P43699 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.18□□□□□ -2.06
NKX2-1P43699 AC009541.1-201ENST00000438279 2662 ntBASIC2.17□□□□□ -2.06
NKX2-1P43699 Y_RNA.58-201ENST00000362807 102 ntBASIC2.17□□□□□ -2.06
NKX2-1P43699 RNU6-490P-201ENST00000362985 107 ntBASIC2.17□□□□□ -2.06
NKX2-1P43699 Y_RNA.146-201ENST00000363549 102 ntBASIC2.17□□□□□ -2.06
NKX2-1P43699 Y_RNA.154-201ENST00000363624 102 ntBASIC2.17□□□□□ -2.06
NKX2-1P43699 RNY3P1-201ENST00000365085 102 ntBASIC2.17□□□□□ -2.06
NKX2-1P43699 RNY3-201ENST00000365484 102 ntBASIC2.17□□□□□ -2.06
NKX2-1P43699 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
NKX2-1P43699 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 166.2 ms