Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL355796.1-201ENST00000406706 323 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 RAC1P8-201ENST00000427086 527 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 MTCO3P29-201ENST00000432119 779 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 NFU1P2-201ENST00000448700 469 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 PAXBP1P1-201ENST00000449315 447 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 BTF3P15-201ENST00000455606 336 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC-0.23□□□□□ -2.45
CUX1P39880 AC048346.1-201ENST00000510247 144 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 MIR4709-201ENST00000577272 72 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 SNRPGP20-201ENST00000604477 205 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 AL161798.1-201ENST00000604630 131 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 AC007363.1-201ENST00000604736 620 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 RNY4P24-201ENST00000362735 96 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 RNU6-223P-201ENST00000362830 107 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 MIR224-201ENST00000384889 81 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 RNA5SP496-201ENST00000391240 109 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 MTND1P21-201ENST00000412991 285 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC-0.23□□□□□ -2.45
CUX1P39880 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC-0.23□□□□□ -2.45
CUX1P39880 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC-0.23□□□□□ -2.45
CUX1P39880 RNFT1P2-201ENST00000443064 757 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC-0.23□□□□□ -2.45
CUX1P39880 RPL37P6-201ENST00000460682 294 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 AC013828.1-201ENST00000481845 158 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC-0.23□□□□□ -2.45
CUX1P39880 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC-0.23□□□□□ -2.45
CUX1P39880 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC-0.23□□□□□ -2.45
CUX1P39880 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC-0.23□□□□□ -2.45
CUX1P39880 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC-0.23□□□□□ -2.45
CUX1P39880 AL079343.1-201ENST00000572358 1771 ntBASIC-0.23□□□□□ -2.45
CUX1P39880 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC-0.24□□□□□ -2.45
CUX1P39880 RNU6-188P-201ENST00000364207 107 ntBASIC-0.24□□□□□ -2.45
CUX1P39880 RNU6-72P-201ENST00000384285 79 ntBASIC-0.24□□□□□ -2.45
CUX1P39880 Y_RNA.548-201ENST00000384656 105 ntBASIC-0.24□□□□□ -2.45
CUX1P39880 MT-TQ-201ENST00000387372 72 ntBASIC-0.24□□□□□ -2.45
CUX1P39880 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC-0.24□□□□□ -2.45
CUX1P39880 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC-0.24□□□□□ -2.45
CUX1P39880 RPS26P42-201ENST00000413485 326 ntBASIC-0.24□□□□□ -2.45
CUX1P39880 ARL5AP1-201ENST00000418991 388 ntBASIC-0.24□□□□□ -2.45
CUX1P39880 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC-0.24□□□□□ -2.45
CUX1P39880 VN1R10P-201ENST00000447106 875 ntBASIC-0.24□□□□□ -2.45
CUX1P39880 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC-0.24□□□□□ -2.45
CUX1P39880 AC069113.3-201ENST00000521019 150 ntBASIC-0.24□□□□□ -2.45
CUX1P39880 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC-0.24□□□□□ -2.45
CUX1P39880 AC022022.2-201ENST00000602989 360 ntBASIC-0.24□□□□□ -2.45
CUX1P39880 MTND4P21-201ENST00000453886 1357 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 AC107982.1-201ENST00000507171 1300 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 RNU6-877P-201ENST00000383868 107 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 MIR16-1-201ENST00000385271 89 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 UBE2V1P15-201ENST00000407776 448 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 RNU2-28P-201ENST00000410457 189 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC-0.25□□□□□ -2.45
CUX1P39880 GTF2IP3-201ENST00000433887 494 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 USP9YP22-201ENST00000438971 294 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 AC069257.2-201ENST00000441819 155 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 AL929288.2-201ENST00000446368 407 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC-0.25□□□□□ -2.45
CUX1P39880 HMGB1P28-201ENST00000507778 552 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 AC136618.2-201ENST00000575091 400 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 MIR4764-201ENST00000580680 88 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 AL353778.1-201ENST00000603149 408 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 AL355816.2-201ENST00000610049 647 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 AC116165.2-201ENST00000616705 206 ntBASIC-0.25□□□□□ -2.45
CUX1P39880 Y_RNA.25-201ENST00000362528 102 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 RNU4-48P-201ENST00000365559 182 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 RNU6-843P-201ENST00000384454 104 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 SNORA16.2-201ENST00000390991 127 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 TMSB4XP8-201ENST00000402089 135 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 RNU6ATAC33P-201ENST00000408647 126 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.26□□□□□ -2.45
CUX1P39880 TMSB4XP6-201ENST00000415187 135 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 TMSB4XP1-201ENST00000424567 135 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 USP9YP14-201ENST00000430663 563 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 ZFAND6P1-201ENST00000434138 605 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 AC002486.1-201ENST00000435098 391 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC-0.26□□□□□ -2.45
CUX1P39880 snoU13.14-201ENST00000459372 104 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 Y_RNA.654-201ENST00000497848 106 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 RNU6-1110P-201ENST00000516462 101 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 SNORD60.2-201ENST00000516883 86 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 AC106038.2-201ENST00000520706 568 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 AC090615.1-201ENST00000577519 154 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 AC078795.2-201ENST00000602835 1252 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 AL358072.1-201ENST00000604156 575 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 AL353149.1-201ENST00000610667 244 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 AL163051.2-201ENST00000618976 735 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 MIR1295B-201ENST00000636144 60 ntBASIC-0.26□□□□□ -2.45
CUX1P39880 AC092268.1-201ENST00000342691 405 ntBASIC-0.27□□□□□ -2.45
CUX1P39880 RNU6-512P-201ENST00000364438 103 ntBASIC-0.27□□□□□ -2.45
CUX1P39880 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC-0.27□□□□□ -2.45
CUX1P39880 MTCO1P21-201ENST00000416634 589 ntBASIC-0.27□□□□□ -2.45
CUX1P39880 MTCO2P1-201ENST00000424648 477 ntBASIC-0.27□□□□□ -2.45
CUX1P39880 AC092170.1-201ENST00000440211 356 ntBASIC-0.27□□□□□ -2.45
CUX1P39880 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC-0.27□□□□□ -2.45
CUX1P39880 snoU13.25-201ENST00000458945 104 ntBASIC-0.27□□□□□ -2.45
CUX1P39880 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC-0.27□□□□□ -2.45
CUX1P39880 AC022523.2-201ENST00000561045 150 ntBASIC-0.27□□□□□ -2.45
CUX1P39880 AL357312.1-201ENST00000603879 298 ntBASIC-0.27□□□□□ -2.45
CUX1P39880 AC011155.2-201ENST00000623202 216 ntBASIC-0.27□□□□□ -2.45
CUX1P39880 RNU6-657P-201ENST00000383904 107 ntBASIC-0.28□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 136.8 ms