Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 WARS2P1-201ENST00000429678 537 ntBASIC3.26□□□□□ -1.89
MSX2P35548 RPS29P7-201ENST00000439662 171 ntBASIC3.26□□□□□ -1.89
MSX2P35548 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.26□□□□□ -1.89
MSX2P35548 RPS27P29-201ENST00000463110 252 ntBASIC3.26□□□□□ -1.89
MSX2P35548 COX6CP14-201ENST00000469580 174 ntBASIC3.26□□□□□ -1.89
MSX2P35548 RPS27AP10-201ENST00000496103 208 ntBASIC3.26□□□□□ -1.89
MSX2P35548 Y_RNA.683-201ENST00000516508 93 ntBASIC3.26□□□□□ -1.89
MSX2P35548 RNU6-567P-201ENST00000516746 107 ntBASIC3.26□□□□□ -1.89
MSX2P35548 AC024405.2-202ENST00000532731 184 ntBASIC3.26□□□□□ -1.89
MSX2P35548 CYCSP30-201ENST00000546447 172 ntBASIC3.26□□□□□ -1.89
MSX2P35548 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.26□□□□□ -1.89
MSX2P35548 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.26□□□□□ -1.89
MSX2P35548 AC019159.1-201ENST00000605094 187 ntBASIC3.26□□□□□ -1.89
MSX2P35548 AC005296.1-201ENST00000616145 209 ntBASIC3.26□□□□□ -1.89
MSX2P35548 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.26□□□□□ -1.89
MSX2P35548 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
MSX2P35548 AL079305.1-201ENST00000623159 3008 ntBASIC3.26□□□□□ -1.89
MSX2P35548 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
MSX2P35548 AC010680.1-201ENST00000590024 3590 ntBASIC3.25□□□□□ -1.89
MSX2P35548 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
MSX2P35548 Y_RNA.122-201ENST00000363331 96 ntBASIC3.25□□□□□ -1.89
MSX2P35548 RNU6-137P-201ENST00000363680 108 ntBASIC3.25□□□□□ -1.89
MSX2P35548 RNU6-142P-201ENST00000384019 107 ntBASIC3.25□□□□□ -1.89
MSX2P35548 RNU6-187P-201ENST00000384139 106 ntBASIC3.25□□□□□ -1.89
MSX2P35548 Y_RNA.570-201ENST00000384750 101 ntBASIC3.25□□□□□ -1.89
MSX2P35548 MIR329-1-201ENST00000385028 80 ntBASIC3.25□□□□□ -1.89
MSX2P35548 RNU6-493P-201ENST00000391321 108 ntBASIC3.25□□□□□ -1.89
MSX2P35548 PTMAP2-201ENST00000397627 327 ntBASIC3.25□□□□□ -1.89
MSX2P35548 RNU6-651P-201ENST00000411040 105 ntBASIC3.25□□□□□ -1.89
MSX2P35548 AC099548.1-201ENST00000421443 426 ntBASIC3.25□□□□□ -1.89
MSX2P35548 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.25□□□□□ -1.89
MSX2P35548 AL031183.1-201ENST00000457667 207 ntBASIC3.25□□□□□ -1.89
MSX2P35548 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.25□□□□□ -1.89
MSX2P35548 RPL7P49-201ENST00000471402 708 ntBASIC3.25□□□□□ -1.89
MSX2P35548 MRPL42P6-201ENST00000486397 371 ntBASIC3.25□□□□□ -1.89
MSX2P35548 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.25□□□□□ -1.89
MSX2P35548 SNORD116-28-201ENST00000516123 91 ntBASIC3.25□□□□□ -1.89
MSX2P35548 SNORA25.14-201ENST00000516481 132 ntBASIC3.25□□□□□ -1.89
MSX2P35548 RNU6-58P-201ENST00000517143 103 ntBASIC3.25□□□□□ -1.89
MSX2P35548 SNORA31.23-201ENST00000517219 133 ntBASIC3.25□□□□□ -1.89
MSX2P35548 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.25□□□□□ -1.89
MSX2P35548 MIR5695-201ENST00000579717 85 ntBASIC3.25□□□□□ -1.89
MSX2P35548 MIR3910-1-201ENST00000580936 111 ntBASIC3.25□□□□□ -1.89
MSX2P35548 MIR5187-201ENST00000583479 76 ntBASIC3.25□□□□□ -1.89
MSX2P35548 AC010620.2-201ENST00000600135 313 ntBASIC3.25□□□□□ -1.89
MSX2P35548 AL162424.1-201ENST00000602325 221 ntBASIC3.25□□□□□ -1.89
MSX2P35548 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
MSX2P35548 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.25□□□□□ -1.89
MSX2P35548 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.25□□□□□ -1.89
MSX2P35548 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
MSX2P35548 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
MSX2P35548 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
MSX2P35548 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSX2P35548 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSX2P35548 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSX2P35548 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.24□□□□□ -1.89
MSX2P35548 SNORD115-8-201ENST00000363856 82 ntBASIC3.24□□□□□ -1.89
MSX2P35548 RNU6-961P-201ENST00000363893 105 ntBASIC3.24□□□□□ -1.89
MSX2P35548 SNORD115-38-201ENST00000365037 82 ntBASIC3.24□□□□□ -1.89
MSX2P35548 SNORA36A-201ENST00000384221 132 ntBASIC3.24□□□□□ -1.89
MSX2P35548 RNU6-1145P-201ENST00000384246 107 ntBASIC3.24□□□□□ -1.89
MSX2P35548 RNU6-541P-201ENST00000384709 110 ntBASIC3.24□□□□□ -1.89
MSX2P35548 Y_RNA.569-201ENST00000384749 103 ntBASIC3.24□□□□□ -1.89
MSX2P35548 U3.19-201ENST00000390893 196 ntBASIC3.24□□□□□ -1.89
MSX2P35548 RN7SKP61-201ENST00000410642 295 ntBASIC3.24□□□□□ -1.89
MSX2P35548 NDUFS5P4-201ENST00000412983 318 ntBASIC3.24□□□□□ -1.89
MSX2P35548 COX6CP10-201ENST00000416832 224 ntBASIC3.24□□□□□ -1.89
MSX2P35548 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.24□□□□□ -1.89
MSX2P35548 AL133162.1-201ENST00000463228 453 ntBASIC3.24□□□□□ -1.89
MSX2P35548 RNU1-143P-201ENST00000516296 146 ntBASIC3.24□□□□□ -1.89
MSX2P35548 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.24□□□□□ -1.89
MSX2P35548 MIR3133-201ENST00000583157 78 ntBASIC3.24□□□□□ -1.89
MSX2P35548 MIR4282-201ENST00000583613 67 ntBASIC3.24□□□□□ -1.89
MSX2P35548 AL451007.1-201ENST00000595491 289 ntBASIC3.24□□□□□ -1.89
MSX2P35548 Z83818.1-201ENST00000603584 150 ntBASIC3.24□□□□□ -1.89
MSX2P35548 AC024220.1-201ENST00000603675 484 ntBASIC3.24□□□□□ -1.89
MSX2P35548 U1.23-201ENST00000610293 146 ntBASIC3.24□□□□□ -1.89
MSX2P35548 RNU1-68P-201ENST00000615382 146 ntBASIC3.24□□□□□ -1.89
MSX2P35548 U1.39-201ENST00000621562 146 ntBASIC3.24□□□□□ -1.89
MSX2P35548 AL354798.1-201ENST00000622505 329 ntBASIC3.24□□□□□ -1.89
MSX2P35548 AP003355.3-201ENST00000623465 114 ntBASIC3.24□□□□□ -1.89
MSX2P35548 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
MSX2P35548 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.24□□□□□ -1.89
MSX2P35548 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
MSX2P35548 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
MSX2P35548 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
MSX2P35548 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.24□□□□□ -1.89
MSX2P35548 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
MSX2P35548 SNORD9-201ENST00000362566 104 ntBASIC3.23□□□□□ -1.89
MSX2P35548 RNU6-626P-201ENST00000363354 107 ntBASIC3.23□□□□□ -1.89
MSX2P35548 RNU6-1141P-201ENST00000364520 107 ntBASIC3.23□□□□□ -1.89
MSX2P35548 Y_RNA.275-201ENST00000364726 110 ntBASIC3.23□□□□□ -1.89
MSX2P35548 Y_RNA.446-201ENST00000384178 104 ntBASIC3.23□□□□□ -1.89
MSX2P35548 RNU6-198P-201ENST00000384258 104 ntBASIC3.23□□□□□ -1.89
MSX2P35548 RNU6-125P-201ENST00000384505 107 ntBASIC3.23□□□□□ -1.89
MSX2P35548 MIR544A-201ENST00000384855 91 ntBASIC3.23□□□□□ -1.89
MSX2P35548 RNU1-101P-201ENST00000391171 127 ntBASIC3.23□□□□□ -1.89
MSX2P35548 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.23□□□□□ -1.89
MSX2P35548 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.23□□□□□ -1.89
MSX2P35548 AL714022.1-201ENST00000439897 151 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 166.9 ms