Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC064872.1-201ENST00000604823 1072 ntBASIC1.3□□□□□ -2.2
USF1P22415 MIR8074-201ENST00000615081 81 ntBASIC1.3□□□□□ -2.2
USF1P22415 ZNF209P-201ENST00000593450 2304 ntBASIC1.3□□□□□ -2.2
USF1P22415 RNU4-21P-201ENST00000362802 126 ntBASIC1.29□□□□□ -2.2
USF1P22415 SNORA7.1-201ENST00000363750 139 ntBASIC1.29□□□□□ -2.2
USF1P22415 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
USF1P22415 RNU6-174P-201ENST00000410406 106 ntBASIC1.29□□□□□ -2.2
USF1P22415 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.29□□□□□ -2.2
USF1P22415 MTND1P18-201ENST00000448191 573 ntBASIC1.29□□□□□ -2.2
USF1P22415 ZNF736P8Y-201ENST00000451913 669 ntBASIC1.29□□□□□ -2.2
USF1P22415 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC1.29□□□□□ -2.2
USF1P22415 SNRPGP9-201ENST00000456025 225 ntBASIC1.29□□□□□ -2.2
USF1P22415 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.29□□□□□ -2.2
USF1P22415 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC1.29□□□□□ -2.2
USF1P22415 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.29□□□□□ -2.2
USF1P22415 RNU2-69P-201ENST00000516061 100 ntBASIC1.29□□□□□ -2.2
USF1P22415 SNORA31.16-201ENST00000516773 139 ntBASIC1.29□□□□□ -2.2
USF1P22415 SNORA18.6-201ENST00000516792 115 ntBASIC1.29□□□□□ -2.2
USF1P22415 HSPE1P4-201ENST00000550617 308 ntBASIC1.29□□□□□ -2.2
USF1P22415 AL161670.1-201ENST00000554348 137 ntBASIC1.29□□□□□ -2.2
USF1P22415 AL160236.1-201ENST00000556317 195 ntBASIC1.29□□□□□ -2.2
USF1P22415 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.29□□□□□ -2.2
USF1P22415 AC109446.1-201ENST00000566172 220 ntBASIC1.29□□□□□ -2.2
USF1P22415 MIR3923-201ENST00000579521 83 ntBASIC1.29□□□□□ -2.2
USF1P22415 AC007494.3-201ENST00000624660 743 ntBASIC1.29□□□□□ -2.2
USF1P22415 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.29□□□□□ -2.2
USF1P22415 FGF7P2-201ENST00000332473 296 ntBASIC1.28□□□□□ -2.2
USF1P22415 AC092268.1-201ENST00000342691 405 ntBASIC1.28□□□□□ -2.2
USF1P22415 Y_RNA.269-201ENST00000364685 89 ntBASIC1.28□□□□□ -2.2
USF1P22415 RNU4-91P-201ENST00000364778 135 ntBASIC1.28□□□□□ -2.2
USF1P22415 SNORD32A-201ENST00000364805 84 ntBASIC1.28□□□□□ -2.2
USF1P22415 RNU6-297P-201ENST00000384636 107 ntBASIC1.28□□□□□ -2.2
USF1P22415 SNORD70.1-201ENST00000391007 85 ntBASIC1.28□□□□□ -2.2
USF1P22415 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.28□□□□□ -2.2
USF1P22415 RNA5SP201-201ENST00000410316 124 ntBASIC1.28□□□□□ -2.2
USF1P22415 AP000275.1-201ENST00000411943 390 ntBASIC1.28□□□□□ -2.2
USF1P22415 MTCO3P41-201ENST00000414801 328 ntBASIC1.28□□□□□ -2.2
USF1P22415 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.28□□□□□ -2.2
USF1P22415 AL117339.3-201ENST00000418733 162 ntBASIC1.28□□□□□ -2.2
USF1P22415 SNAP23P1-201ENST00000433229 246 ntBASIC1.28□□□□□ -2.2
USF1P22415 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.28□□□□□ -2.2
USF1P22415 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.28□□□□□ -2.2
USF1P22415 AC025465.3-201ENST00000510570 311 ntBASIC1.28□□□□□ -2.2
USF1P22415 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.28□□□□□ -2.2
USF1P22415 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.28□□□□□ -2.2
USF1P22415 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.28□□□□□ -2.2
USF1P22415 MIR3941-201ENST00000582572 103 ntBASIC1.28□□□□□ -2.2
USF1P22415 AC068944.2-201ENST00000610373 403 ntBASIC1.28□□□□□ -2.2
USF1P22415 AC120349.3-201ENST00000624377 529 ntBASIC1.28□□□□□ -2.2
USF1P22415 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.28□□□□□ -2.2
USF1P22415 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
USF1P22415 MTND4P14-201ENST00000435799 1354 ntBASIC1.27□□□□□ -2.21
USF1P22415 RNU6-439P-201ENST00000384188 106 ntBASIC1.27□□□□□ -2.21
USF1P22415 RNU6-456P-201ENST00000384493 107 ntBASIC1.27□□□□□ -2.21
USF1P22415 RNU6-1127P-201ENST00000384580 107 ntBASIC1.27□□□□□ -2.21
USF1P22415 MT-TH-201ENST00000387441 69 ntBASIC1.27□□□□□ -2.21
USF1P22415 SNORA26.3-201ENST00000391119 136 ntBASIC1.27□□□□□ -2.21
USF1P22415 RN7SKP51-201ENST00000410781 304 ntBASIC1.27□□□□□ -2.21
USF1P22415 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.27□□□□□ -2.21
USF1P22415 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC1.27□□□□□ -2.21
USF1P22415 PIGFP2-201ENST00000421400 651 ntBASIC1.27□□□□□ -2.21
USF1P22415 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.27□□□□□ -2.21
USF1P22415 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC1.27□□□□□ -2.21
USF1P22415 MTCO3P46-201ENST00000425787 232 ntBASIC1.27□□□□□ -2.21
USF1P22415 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.27□□□□□ -2.21
USF1P22415 AC133104.1-201ENST00000429100 218 ntBASIC1.27□□□□□ -2.21
USF1P22415 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.27□□□□□ -2.21
USF1P22415 AL133396.1-201ENST00000432048 687 ntBASIC1.27□□□□□ -2.21
USF1P22415 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.27□□□□□ -2.21
USF1P22415 AL133217.1-201ENST00000450980 425 ntBASIC1.27□□□□□ -2.21
USF1P22415 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.27□□□□□ -2.21
USF1P22415 AMD1P1-201ENST00000457220 922 ntBASIC1.27□□□□□ -2.21
USF1P22415 RNA5SP269-201ENST00000459032 137 ntBASIC1.27□□□□□ -2.21
USF1P22415 AC087477.1-201ENST00000465747 340 ntBASIC1.27□□□□□ -2.21
USF1P22415 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC1.27□□□□□ -2.21
USF1P22415 MTCO3P28-201ENST00000513351 515 ntBASIC1.27□□□□□ -2.21
USF1P22415 SNORA25.17-201ENST00000517184 124 ntBASIC1.27□□□□□ -2.21
USF1P22415 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.27□□□□□ -2.21
USF1P22415 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.27□□□□□ -2.21
USF1P22415 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.27□□□□□ -2.21
USF1P22415 MIR4421-201ENST00000578133 69 ntBASIC1.27□□□□□ -2.21
USF1P22415 RSL24D1P11-201ENST00000591045 491 ntBASIC1.27□□□□□ -2.21
USF1P22415 AC012507.3-201ENST00000603556 477 ntBASIC1.27□□□□□ -2.21
USF1P22415 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
USF1P22415 AL157834.3-201ENST00000615543 103 ntBASIC1.27□□□□□ -2.21
USF1P22415 AC022513.1-201ENST00000624512 117 ntBASIC1.27□□□□□ -2.21
USF1P22415 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.27□□□□□ -2.21
USF1P22415 MTND5P9-201ENST00000503854 1755 ntBASIC1.26□□□□□ -2.21
USF1P22415 RNU6-112P-201ENST00000363599 104 ntBASIC1.26□□□□□ -2.21
USF1P22415 U3.9-201ENST00000363823 204 ntBASIC1.26□□□□□ -2.21
USF1P22415 RNU6-392P-201ENST00000364926 101 ntBASIC1.26□□□□□ -2.21
USF1P22415 RNU6-438P-201ENST00000365561 103 ntBASIC1.26□□□□□ -2.21
USF1P22415 RNU6-606P-201ENST00000384721 111 ntBASIC1.26□□□□□ -2.21
USF1P22415 RNY3P10-201ENST00000384764 102 ntBASIC1.26□□□□□ -2.21
USF1P22415 SNORA16.2-201ENST00000390991 127 ntBASIC1.26□□□□□ -2.21
USF1P22415 RNU6-248P-201ENST00000410720 107 ntBASIC1.26□□□□□ -2.21
USF1P22415 BX295541.1-201ENST00000417774 250 ntBASIC1.26□□□□□ -2.21
USF1P22415 RPL23AP95-201ENST00000426806 265 ntBASIC1.26□□□□□ -2.21
USF1P22415 MTCO1P44-201ENST00000441935 243 ntBASIC1.26□□□□□ -2.21
USF1P22415 AL357134.1-201ENST00000445848 426 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 144.6 ms