Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AP000553.6-201ENST00000641242 118 ntBASIC4.12□□□□□ -1.75
LIG1P18858 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
LIG1P18858 AC068647.1-201ENST00000489539 2265 ntBASIC4.12□□□□□ -1.75
LIG1P18858 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.12□□□□□ -1.75
LIG1P18858 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
LIG1P18858 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIG1P18858 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.11□□□□□ -1.75
LIG1P18858 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIG1P18858 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIG1P18858 MIR30E-201ENST00000362104 92 ntBASIC4.11□□□□□ -1.75
LIG1P18858 RNU6-858P-201ENST00000362436 107 ntBASIC4.11□□□□□ -1.75
LIG1P18858 SNORD56.1-201ENST00000362913 68 ntBASIC4.11□□□□□ -1.75
LIG1P18858 Y_RNA.240-201ENST00000364469 95 ntBASIC4.11□□□□□ -1.75
LIG1P18858 RNU6-1175P-201ENST00000365200 107 ntBASIC4.11□□□□□ -1.75
LIG1P18858 SNORD50.2-201ENST00000365465 70 ntBASIC4.11□□□□□ -1.75
LIG1P18858 MIR200C-201ENST00000384980 68 ntBASIC4.11□□□□□ -1.75
LIG1P18858 MIR613-201ENST00000385248 95 ntBASIC4.11□□□□□ -1.75
LIG1P18858 MIR493-201ENST00000385254 89 ntBASIC4.11□□□□□ -1.75
LIG1P18858 RNU6-918P-201ENST00000391219 106 ntBASIC4.11□□□□□ -1.75
LIG1P18858 RNA5SP38-201ENST00000410750 119 ntBASIC4.11□□□□□ -1.75
LIG1P18858 RNU6-1001P-201ENST00000411265 100 ntBASIC4.11□□□□□ -1.75
LIG1P18858 RPL19P1-201ENST00000411635 428 ntBASIC4.11□□□□□ -1.75
LIG1P18858 AL133547.1-201ENST00000448546 220 ntBASIC4.11□□□□□ -1.75
LIG1P18858 AC091959.1-201ENST00000495857 238 ntBASIC4.11□□□□□ -1.75
LIG1P18858 AC110768.1-201ENST00000509222 400 ntBASIC4.11□□□□□ -1.75
LIG1P18858 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.11□□□□□ -1.75
LIG1P18858 AC020895.1-201ENST00000595362 272 ntBASIC4.11□□□□□ -1.75
LIG1P18858 AC022149.2-201ENST00000621061 203 ntBASIC4.11□□□□□ -1.75
LIG1P18858 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.11□□□□□ -1.75
LIG1P18858 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.11□□□□□ -1.75
LIG1P18858 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC4.11□□□□□ -1.75
LIG1P18858 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.11□□□□□ -1.75
LIG1P18858 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIG1P18858 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC4.11□□□□□ -1.75
LIG1P18858 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.11□□□□□ -1.75
LIG1P18858 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
LIG1P18858 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.1□□□□□ -1.75
LIG1P18858 AC103988.1-201ENST00000566382 2177 ntBASIC4.1□□□□□ -1.75
LIG1P18858 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
LIG1P18858 RNU6-961P-201ENST00000363893 105 ntBASIC4.1□□□□□ -1.75
LIG1P18858 Y_RNA.233-201ENST00000364407 101 ntBASIC4.1□□□□□ -1.75
LIG1P18858 RNU6-1141P-201ENST00000364520 107 ntBASIC4.1□□□□□ -1.75
LIG1P18858 U3.19-201ENST00000390893 196 ntBASIC4.1□□□□□ -1.75
LIG1P18858 SNORA46.1-201ENST00000391069 153 ntBASIC4.1□□□□□ -1.75
LIG1P18858 MIR888-201ENST00000401186 77 ntBASIC4.1□□□□□ -1.75
LIG1P18858 RN7SKP61-201ENST00000410642 295 ntBASIC4.1□□□□□ -1.75
LIG1P18858 AC125238.1-201ENST00000448842 249 ntBASIC4.1□□□□□ -1.75
LIG1P18858 AC007395.1-201ENST00000451333 677 ntBASIC4.1□□□□□ -1.75
LIG1P18858 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.1□□□□□ -1.75
LIG1P18858 SNORD2.1-201ENST00000458762 69 ntBASIC4.1□□□□□ -1.75
LIG1P18858 RPS29P26-201ENST00000477483 171 ntBASIC4.1□□□□□ -1.75
LIG1P18858 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
LIG1P18858 AC104619.4-201ENST00000510773 249 ntBASIC4.1□□□□□ -1.75
LIG1P18858 SNORA40.9-201ENST00000515895 93 ntBASIC4.1□□□□□ -1.75
LIG1P18858 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC4.1□□□□□ -1.75
LIG1P18858 AC011602.1-201ENST00000546484 331 ntBASIC4.1□□□□□ -1.75
LIG1P18858 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.1□□□□□ -1.75
LIG1P18858 UBL5P4-201ENST00000562584 236 ntBASIC4.1□□□□□ -1.75
LIG1P18858 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.1□□□□□ -1.75
LIG1P18858 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC4.1□□□□□ -1.75
LIG1P18858 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.1□□□□□ -1.75
LIG1P18858 AL034408.1-202ENST00000636088 415 ntBASIC4.1□□□□□ -1.75
LIG1P18858 AC012442.3-202ENST00000636742 206 ntBASIC4.1□□□□□ -1.75
LIG1P18858 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIG1P18858 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.1□□□□□ -1.75
LIG1P18858 AL359854.1-201ENST00000614203 1594 ntBASIC4.1□□□□□ -1.75
LIG1P18858 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIG1P18858 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
LIG1P18858 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
LIG1P18858 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
LIG1P18858 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC4.09□□□□□ -1.75
LIG1P18858 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.09□□□□□ -1.75
LIG1P18858 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
LIG1P18858 Y_RNA.418-201ENST00000384029 102 ntBASIC4.09□□□□□ -1.75
LIG1P18858 RNU6-1289P-201ENST00000384431 106 ntBASIC4.09□□□□□ -1.75
LIG1P18858 RPL21P17-201ENST00000397467 475 ntBASIC4.09□□□□□ -1.75
LIG1P18858 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC4.09□□□□□ -1.75
LIG1P18858 RPL23AP36-201ENST00000413895 458 ntBASIC4.09□□□□□ -1.75
LIG1P18858 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.09□□□□□ -1.75
LIG1P18858 AC078809.1-201ENST00000427601 140 ntBASIC4.09□□□□□ -1.75
LIG1P18858 RPS4XP22-201ENST00000480755 780 ntBASIC4.09□□□□□ -1.75
LIG1P18858 AC016632.1-201ENST00000503994 196 ntBASIC4.09□□□□□ -1.75
LIG1P18858 TRAPPC2P7-201ENST00000509650 231 ntBASIC4.09□□□□□ -1.75
LIG1P18858 RNU1-95P-201ENST00000516357 160 ntBASIC4.09□□□□□ -1.75
LIG1P18858 RNU1-128P-201ENST00000516704 160 ntBASIC4.09□□□□□ -1.75
LIG1P18858 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC4.09□□□□□ -1.75
LIG1P18858 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.09□□□□□ -1.75
LIG1P18858 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.09□□□□□ -1.75
LIG1P18858 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.09□□□□□ -1.75
LIG1P18858 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.09□□□□□ -1.75
LIG1P18858 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
LIG1P18858 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
LIG1P18858 IGHVIII-44-202ENST00000636235 289 ntBASIC4.09□□□□□ -1.75
LIG1P18858 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.08□□□□□ -1.76
LIG1P18858 MAPK10-362ENST00000641864 4484 ntBASIC4.08□□□□□ -1.76
LIG1P18858 SNORA73.2-201ENST00000364946 201 ntBASIC4.08□□□□□ -1.76
LIG1P18858 RNU1-140P-201ENST00000365040 165 ntBASIC4.08□□□□□ -1.76
LIG1P18858 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LIG1P18858 Y_RNA.435-201ENST00000384095 112 ntBASIC4.08□□□□□ -1.76
LIG1P18858 SNORA5A-201ENST00000384111 134 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms