Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AGGF1P4-201ENST00000568249 801 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 MIR3169-201ENST00000578032 83 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.56□□□□□ -2.16
CLDN9O95484 AC010928.2-201ENST00000588017 287 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 AC068790.2-201ENST00000602601 557 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 AC025449.1-201ENST00000603896 529 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 AL359821.1-201ENST00000605519 182 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.56□□□□□ -2.16
CLDN9O95484 AC072046.2-201ENST00000618366 268 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.56□□□□□ -2.16
CLDN9O95484 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.55□□□□□ -2.16
CLDN9O95484 SNORD32A-201ENST00000364805 84 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.55□□□□□ -2.16
CLDN9O95484 RNU6-26P-201ENST00000383985 107 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
CLDN9O95484 SNORA17.3-201ENST00000391159 129 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 AL627390.1-201ENST00000396055 340 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 RNU2-29P-201ENST00000410423 189 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 RN7SKP142-201ENST00000411236 328 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.55□□□□□ -2.16
CLDN9O95484 MTCO2P34-201ENST00000421994 607 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.55□□□□□ -2.16
CLDN9O95484 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.55□□□□□ -2.16
CLDN9O95484 RNU6-333P-201ENST00000459117 107 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 AC005741.1-201ENST00000511094 432 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 SNORA25.15-201ENST00000516487 89 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 RNA5SP480-201ENST00000516840 109 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 RNU6-430P-201ENST00000517078 107 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 HSBP1P1-201ENST00000555205 166 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.55□□□□□ -2.16
CLDN9O95484 AC012507.3-201ENST00000603556 477 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
CLDN9O95484 ZNF680P1-201ENST00000436625 1469 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 AC027514.1-201ENST00000588561 1603 ntBASIC1.55□□□□□ -2.16
CLDN9O95484 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.54□□□□□ -2.16
CLDN9O95484 AC006026.1-201ENST00000444025 1803 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
CLDN9O95484 SNORD114-6-201ENST00000364393 72 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 RPS29P13-201ENST00000402041 169 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.54□□□□□ -2.16
CLDN9O95484 AL358453.1-201ENST00000422522 250 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.54□□□□□ -2.16
CLDN9O95484 MTCO2P11-201ENST00000431069 680 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 RPS6P15-201ENST00000431996 751 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 SNAP23P1-201ENST00000433229 246 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 SNRPFP3-201ENST00000457792 225 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 AC005840.1-201ENST00000498412 377 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 AC079140.5-201ENST00000507882 310 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC1.54□□□□□ -2.16
CLDN9O95484 Y_RNA.670-201ENST00000516255 105 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.54□□□□□ -2.16
CLDN9O95484 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.54□□□□□ -2.16
CLDN9O95484 CBX3P4-201ENST00000538909 354 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.54□□□□□ -2.16
CLDN9O95484 AC109446.1-201ENST00000566172 220 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 AL391840.1-201ENST00000571144 367 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 VN1R80P-201ENST00000597126 338 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 NIFKP6-201ENST00000598115 845 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 VN1R107P-201ENST00000601784 209 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
CLDN9O95484 AC120349.3-201ENST00000624377 529 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 MTND4P23-201ENST00000447723 1363 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 AC233981.2-201ENST00000611524 1614 ntBASIC1.54□□□□□ -2.16
CLDN9O95484 RNU6-552P-201ENST00000362869 119 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 RNA5SP190-201ENST00000365222 118 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 Y_RNA.332-201ENST00000365271 113 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 AL033519.2-201ENST00000403958 392 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 MTCYBP2-201ENST00000407745 171 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 RN7SKP61-201ENST00000410642 295 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 RNA5SP100-201ENST00000410903 110 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 RNA5SP59-201ENST00000410922 110 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.53□□□□□ -2.16
CLDN9O95484 MTND4P14-201ENST00000435799 1354 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 MTND4P32-201ENST00000437189 1237 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 AL031667.1-201ENST00000440222 725 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.53□□□□□ -2.16
CLDN9O95484 AC132479.1-201ENST00000449160 144 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 AC130509.1-201ENST00000464158 433 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.53□□□□□ -2.16
CLDN9O95484 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 AC069113.1-201ENST00000517763 267 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.53□□□□□ -2.16
CLDN9O95484 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC1.53□□□□□ -2.16
CLDN9O95484 COPS8P3-201ENST00000526024 482 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
CLDN9O95484 LINC02555-201ENST00000563933 1951 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 MIR5583-1-201ENST00000580941 59 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 AC109347.2-201ENST00000610220 349 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.53□□□□□ -2.16
CLDN9O95484 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.53□□□□□ -2.17
CLDN9O95484 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
CLDN9O95484 AC092268.1-201ENST00000342691 405 ntBASIC1.52□□□□□ -2.17
CLDN9O95484 Y_RNA.112-201ENST00000363250 102 ntBASIC1.52□□□□□ -2.17
CLDN9O95484 RNU4-42P-201ENST00000364738 142 ntBASIC1.52□□□□□ -2.17
CLDN9O95484 MTCO3P41-201ENST00000414801 328 ntBASIC1.52□□□□□ -2.17
CLDN9O95484 MTATP6P18-201ENST00000417994 673 ntBASIC1.52□□□□□ -2.17
CLDN9O95484 AC078809.1-201ENST00000427601 140 ntBASIC1.52□□□□□ -2.17
CLDN9O95484 CETN4P-201ENST00000432407 469 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms