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Protein–RNA interactions for Protein: O75056
SDC3, Syndecan-3, human
Predictions only
Length
442 aa
.
Download Table
Protein
RNA
Prediction (catRAPID)
Interaction (ENCODE eCLIP)
Gene
UniProt Accession
Transcript Symbol
Ensembl Transcript ID
Length
Transcript Status
Prediction Score
Prediction z-Score
p-Value
Fold Change
SDC3
O75056
Y_RNA.41-201
ENST00000362646
102 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
SNORD32A-201
ENST00000364805
84 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
RNU4-66P-201
ENST00000365199
138 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
RNU6-43P-201
ENST00000384302
107 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
TRAV40-201
ENST00000390467
317 nt
APPRIS P1
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
SNORA46.1-201
ENST00000391069
153 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
AL512604.1-201
ENST00000404812
257 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
AC096920.1-201
ENST00000423991
241 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
RPS15AP10-201
ENST00000432472
382 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
AL136369.1-201
ENST00000437825
244 nt
TSL 5
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
AC018816.1-203
ENST00000441894
338 nt
TSL 3
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
MTCO2P3-201
ENST00000442543
421 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
AK3P2-201
ENST00000507976
429 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
LINC02276-201
ENST00000508388
138 nt
TSL 3
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
AC097467.1-201
ENST00000513660
370 nt
TSL 5
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
RNU6-1069P-201
ENST00000516612
133 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
SNORD60.2-201
ENST00000516883
86 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
AC090568.2-205
ENST00000518631
576 nt
TSL 4
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
AC023200.1-201
ENST00000519660
651 nt
TSL 3
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
AC103996.1-201
ENST00000555468
102 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
AC025043.1-201
ENST00000558047
625 nt
TSL 2
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
DCAF17-212
ENST00000611110
975 nt
TSL 1 (best)
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
ZEB2_AS1_1.1-201
ENST00000621504
128 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
AC099654.12-201
ENST00000639868
649 nt
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
MUC15-202
ENST00000436318
3118 nt
TSL 5
BASIC
1.9
□□□□□ -2.11
SDC3
O75056
ZNF644-212
ENST00000621077
2056 nt
TSL 5
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AC121333.1-201
ENST00000567488
2709 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
Y_RNA.378-201
ENST00000365652
113 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
MIR676-201
ENST00000390702
67 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
RN7SKP61-201
ENST00000410642
295 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
RPL23AP95-201
ENST00000426806
265 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AC078809.1-201
ENST00000427601
140 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
SEPT14P3-201
ENST00000439401
183 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AL732372.2-207
ENST00000445840
183 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
SPIN4-AS1-201
ENST00000451979
426 nt
TSL 2
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
MTND3P16-201
ENST00000452205
344 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
SEPT14P2-201
ENST00000453405
183 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
LINC01198-202
ENST00000458282
558 nt
TSL 5
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
RN7SKP210-201
ENST00000459176
261 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
RNU6-1208P-201
ENST00000459588
107 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AC104564.1-201
ENST00000493028
407 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
SEPT14P4-201
ENST00000513445
186 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
RNU6-965P-201
ENST00000516721
96 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
FO082796.1-201
ENST00000523795
183 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AC022616.8-201
ENST00000533569
253 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AC245505.1-201
ENST00000556398
224 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
MIR3136-201
ENST00000583498
78 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AP001109.1-201
ENST00000587114
279 nt
TSL 3
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AC008749.1-201
ENST00000597650
306 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AP000942.3-201
ENST00000603702
160 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AC092747.3-201
ENST00000603769
301 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AL132822.1-201
ENST00000617063
513 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
DLX6-AS1_1.1-201
ENST00000621599
180 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AC068137.3-201
ENST00000639191
341 nt
BASIC
1.89
□□□□□ -2.11
SDC3
O75056
AC008555.8-201
ENST00000623602
2168 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
Y_RNA.167-201
ENST00000363735
109 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
RNU6-944P-201
ENST00000364023
107 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
RNA5SP160-201
ENST00000364866
120 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
Y_RNA.318-201
ENST00000365131
97 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
RNU6-611P-201
ENST00000384276
104 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
RNA5SP450-201
ENST00000411206
102 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
EIF1AXP1-201
ENST00000419267
435 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
CBX3P6-201
ENST00000430257
527 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AL133396.1-201
ENST00000432048
687 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AL035415.1-201
ENST00000447150
289 nt
TSL 5
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AC245102.2-201
ENST00000448956
180 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AC025033.1-201
ENST00000463883
194 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
RNA5SP182-201
ENST00000516064
82 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
Y_RNA.676-201
ENST00000516393
96 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
RNU6-506P-201
ENST00000516553
94 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AC087854.1-201
ENST00000519706
414 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AC114550.2-201
ENST00000524008
397 nt
TSL 3
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AL133279.1-202
ENST00000556789
456 nt
TSL 5
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
ANP32BP3-201
ENST00000559213
706 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AC009558.1-201
ENST00000561174
581 nt
TSL 4
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
EIF1P4-201
ENST00000572664
335 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AC092070.3-201
ENST00000596041
337 nt
TSL 3
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AL162413.1-201
ENST00000603198
110 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AC107304.1-201
ENST00000604229
296 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AP001836.1-201
ENST00000604675
523 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AC092807.2-201
ENST00000609367
243 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
AC063943.3-201
ENST00000615562
356 nt
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
LINC00645-203
ENST00000557399
3512 nt
TSL 1 (best)
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
SCOC-201
ENST00000338517
1864 nt
TSL 4
BASIC
1.88
□□□□□ -2.11
SDC3
O75056
SYT14-201
ENST00000367015
5094 nt
APPRIS ALT2
TSL 1 (best)
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
RNU6-743P-201
ENST00000364151
106 nt
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
Y_RNA.231-201
ENST00000364358
102 nt
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
RNU6-142P-201
ENST00000384019
107 nt
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
TRAJ49-201
ENST00000390488
56 nt
APPRIS P1
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
RNU6-780P-201
ENST00000391030
104 nt
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
SNORA26.3-201
ENST00000391119
136 nt
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
RNU6-908P-201
ENST00000410160
94 nt
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
AL590556.1-201
ENST00000423231
483 nt
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
AC244670.1-201
ENST00000436879
112 nt
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
AL353689.1-201
ENST00000438895
199 nt
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
AL512271.1-201
ENST00000439878
434 nt
TSL 3
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
LINC01564-201
ENST00000448327
566 nt
TSL 3
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
RPL23AP7-203
ENST00000449021
469 nt
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
RNA5SP233-201
ENST00000459153
113 nt
BASIC
1.87
□□□□□ -2.11
SDC3
O75056
AC117394.2-201
ENST00000487827
323 nt
TSL 3
BASIC
1.87
□□□□□ -2.11
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Retrieved 100 of 98,524 protein–RNA pairs in 162.9 ms