Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXC11O43248 AC026464.5-201ENST00000562497 722 ntBASIC2.6□□□□□ -1.99
HOXC11O43248 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.6□□□□□ -1.99
HOXC11O43248 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.6□□□□□ -1.99
HOXC11O43248 Z98751.3-201ENST00000604447 521 ntBASIC2.6□□□□□ -1.99
HOXC11O43248 AC124303.1-201ENST00000605703 360 ntBASIC2.6□□□□□ -1.99
HOXC11O43248 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
HOXC11O43248 Y_RNA.160-201ENST00000363677 92 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 RNU6-944P-201ENST00000364023 107 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 MIR517A-201ENST00000385001 87 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 MIR1294-201ENST00000408503 142 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 DAP3P1-201ENST00000441522 278 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.59□□□□□ -1.99
HOXC11O43248 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXC11O43248 RNU6-329P-201ENST00000459618 107 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 AC068781.1-201ENST00000488231 618 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 PRDX4P1-201ENST00000507189 574 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 HMGB3P3-201ENST00000510526 400 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.59□□□□□ -1.99
HOXC11O43248 AP005639.2-201ENST00000527592 928 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 AC022616.8-201ENST00000533569 253 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HOXC11O43248 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXC11O43248 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.59□□□□□ -1.99
HOXC11O43248 CYP4A27P-201ENST00000567218 190 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXC11O43248 AC005668.1-201ENST00000571142 476 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 AC245884.12-201ENST00000615364 59 ntBASIC2.59□□□□□ -1.99
HOXC11O43248 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.59□□□□□ -1.99
HOXC11O43248 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
HOXC11O43248 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -2
HOXC11O43248 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
HOXC11O43248 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.59□□□□□ -2
HOXC11O43248 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HOXC11O43248 RNU6-968P-201ENST00000384076 107 ntBASIC2.58□□□□□ -2
HOXC11O43248 RNU6-767P-201ENST00000384132 107 ntBASIC2.58□□□□□ -2
HOXC11O43248 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.58□□□□□ -2
HOXC11O43248 MTND3P8-201ENST00000412909 339 ntBASIC2.58□□□□□ -2
HOXC11O43248 AC012306.1-201ENST00000423267 114 ntBASIC2.58□□□□□ -2
HOXC11O43248 MTCO3P46-201ENST00000425787 232 ntBASIC2.58□□□□□ -2
HOXC11O43248 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.58□□□□□ -2
HOXC11O43248 MRPL50P4-201ENST00000446432 475 ntBASIC2.58□□□□□ -2
HOXC11O43248 AC008413.1-201ENST00000511864 177 ntBASIC2.58□□□□□ -2
HOXC11O43248 SNORA4.4-201ENST00000515921 135 ntBASIC2.58□□□□□ -2
HOXC11O43248 RNA5SP24-201ENST00000516478 95 ntBASIC2.58□□□□□ -2
HOXC11O43248 RNU6-1088P-201ENST00000516850 104 ntBASIC2.58□□□□□ -2
HOXC11O43248 RNU1-54P-201ENST00000517181 120 ntBASIC2.58□□□□□ -2
HOXC11O43248 HSPE1P18-201ENST00000517602 280 ntBASIC2.58□□□□□ -2
HOXC11O43248 AC018630.3-201ENST00000542637 96 ntBASIC2.58□□□□□ -2
HOXC11O43248 MIR4790-201ENST00000577799 79 ntBASIC2.58□□□□□ -2
HOXC11O43248 FGF7P1-201ENST00000582820 288 ntBASIC2.58□□□□□ -2
HOXC11O43248 SNORA43.4-201ENST00000629559 138 ntBASIC2.58□□□□□ -2
HOXC11O43248 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.58□□□□□ -2
HOXC11O43248 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
HOXC11O43248 Y_RNA.301-201ENST00000364990 103 ntBASIC2.57□□□□□ -2
HOXC11O43248 SNORA36A-201ENST00000384221 132 ntBASIC2.57□□□□□ -2
HOXC11O43248 RNU1-148P-201ENST00000384472 162 ntBASIC2.57□□□□□ -2
HOXC11O43248 SNORA46.1-201ENST00000391069 153 ntBASIC2.57□□□□□ -2
HOXC11O43248 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
HOXC11O43248 AL359511.1-201ENST00000402970 211 ntBASIC2.57□□□□□ -2
HOXC11O43248 MTCYBP2-201ENST00000407745 171 ntBASIC2.57□□□□□ -2
HOXC11O43248 AC021146.2-201ENST00000504736 556 ntBASIC2.57□□□□□ -2
HOXC11O43248 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.57□□□□□ -2
HOXC11O43248 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.57□□□□□ -2
HOXC11O43248 AC046134.1-201ENST00000514454 666 ntBASIC2.57□□□□□ -2
HOXC11O43248 Y_RNA.682-201ENST00000516457 100 ntBASIC2.57□□□□□ -2
HOXC11O43248 RNA5SP82-201ENST00000516707 92 ntBASIC2.57□□□□□ -2
HOXC11O43248 RNU6-965P-201ENST00000516721 96 ntBASIC2.57□□□□□ -2
HOXC11O43248 RNU6-667P-201ENST00000517186 102 ntBASIC2.57□□□□□ -2
HOXC11O43248 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.57□□□□□ -2
HOXC11O43248 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.57□□□□□ -2
HOXC11O43248 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.57□□□□□ -2
HOXC11O43248 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.57□□□□□ -2
HOXC11O43248 AC026271.5-201ENST00000577873 130 ntBASIC2.57□□□□□ -2
HOXC11O43248 SNORD53-201ENST00000579969 78 ntBASIC2.57□□□□□ -2
HOXC11O43248 MIR4742-201ENST00000581069 85 ntBASIC2.57□□□□□ -2
HOXC11O43248 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.57□□□□□ -2
HOXC11O43248 AL078605.1-201ENST00000603529 500 ntBASIC2.57□□□□□ -2
HOXC11O43248 AL161423.1-201ENST00000613700 262 ntBASIC2.57□□□□□ -2
HOXC11O43248 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.57□□□□□ -2
HOXC11O43248 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.57□□□□□ -2
HOXC11O43248 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
HOXC11O43248 U3.9-201ENST00000363823 204 ntBASIC2.56□□□□□ -2
HOXC11O43248 U8.8-201ENST00000365399 135 ntBASIC2.56□□□□□ -2
HOXC11O43248 RNU6-1286P-201ENST00000383871 107 ntBASIC2.56□□□□□ -2
HOXC11O43248 MT-TL1-201ENST00000386347 75 ntBASIC2.56□□□□□ -2
HOXC11O43248 MIR208B-201ENST00000401172 77 ntBASIC2.56□□□□□ -2
HOXC11O43248 FGF7P8-201ENST00000402994 292 ntBASIC2.56□□□□□ -2
HOXC11O43248 RNA5SP494-201ENST00000410653 129 ntBASIC2.56□□□□□ -2
HOXC11O43248 MTND1P23-201ENST00000416931 372 ntBASIC2.56□□□□□ -2
HOXC11O43248 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.56□□□□□ -2
HOXC11O43248 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.56□□□□□ -2
HOXC11O43248 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.56□□□□□ -2
HOXC11O43248 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.56□□□□□ -2
HOXC11O43248 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.56□□□□□ -2
HOXC11O43248 AL353705.4-201ENST00000449661 238 ntBASIC2.56□□□□□ -2
HOXC11O43248 TRBV12-1-201ENST00000479785 344 ntBASIC2.56□□□□□ -2
HOXC11O43248 AC132942.1-201ENST00000486753 483 ntBASIC2.56□□□□□ -2
HOXC11O43248 MTCO2P30-201ENST00000503662 364 ntBASIC2.56□□□□□ -2
HOXC11O43248 PTP4A1P4-201ENST00000512479 322 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms