Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 AC064862.7-201ENST00000604520 867 ntBASIC20.11■□□□□ 0.81
CHD9Q3L8U1 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHD9Q3L8U1 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 AC090616.6-201ENST00000582640 721 ntBASIC20.1■□□□□ 0.81
CHD9Q3L8U1 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 MIR3180-5-201ENST00000583743 153 ntBASIC20.1■□□□□ 0.81
CHD9Q3L8U1 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.1■□□□□ 0.81
CHD9Q3L8U1 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 AC027796.2-201ENST00000575326 344 ntBASIC20.09■□□□□ 0.81
CHD9Q3L8U1 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 LINC00565-201ENST00000562710 2331 ntBASIC20.09■□□□□ 0.81
CHD9Q3L8U1 AC073314.1-201ENST00000568729 2216 ntBASIC20.09■□□□□ 0.81
CHD9Q3L8U1 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.09■□□□□ 0.81
CHD9Q3L8U1 FAM197Y8-203ENST00000450145 560 ntBASIC20.09■□□□□ 0.81
CHD9Q3L8U1 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 AC009065.1-201ENST00000564055 1225 ntBASIC20.09■□□□□ 0.81
CHD9Q3L8U1 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 AC106730.1-201ENST00000566722 1090 ntBASIC20.09■□□□□ 0.81
CHD9Q3L8U1 AL139424.1-201ENST00000607572 797 ntBASIC20.09■□□□□ 0.81
CHD9Q3L8U1 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
CHD9Q3L8U1 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CHD9Q3L8U1 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CHD9Q3L8U1 PMS2P7-201ENST00000506558 1336 ntBASIC20.08■□□□□ 0.81
CHD9Q3L8U1 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.08■□□□□ 0.81
CHD9Q3L8U1 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.08■□□□□ 0.81
CHD9Q3L8U1 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.81
CHD9Q3L8U1 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.08■□□□□ 0.81
CHD9Q3L8U1 BNIP3P18-201ENST00000593976 575 ntBASIC20.08■□□□□ 0.81
CHD9Q3L8U1 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHD9Q3L8U1 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.08■□□□□ 0.8
CHD9Q3L8U1 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
CHD9Q3L8U1 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHD9Q3L8U1 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHD9Q3L8U1 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHD9Q3L8U1 TERC-201ENST00000602385 541 ntBASIC20.08■□□□□ 0.8
CHD9Q3L8U1 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.08■□□□□ 0.8
CHD9Q3L8U1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms