Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLCN3P51790 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLCN3P51790 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLCN3P51790 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.85■□□□□ 0.93
CLCN3P51790 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
CLCN3P51790 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.85■□□□□ 0.93
CLCN3P51790 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLCN3P51790 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLCN3P51790 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLCN3P51790 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.85■□□□□ 0.93
CLCN3P51790 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.85■□□□□ 0.93
CLCN3P51790 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.85■□□□□ 0.93
CLCN3P51790 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLCN3P51790 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.85■□□□□ 0.93
CLCN3P51790 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLCN3P51790 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.85■□□□□ 0.93
CLCN3P51790 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.85■□□□□ 0.93
CLCN3P51790 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.85■□□□□ 0.93
CLCN3P51790 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
CLCN3P51790 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLCN3P51790 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLCN3P51790 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLCN3P51790 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.85■□□□□ 0.93
CLCN3P51790 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLCN3P51790 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLCN3P51790 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLCN3P51790 IRX1P1-201ENST00000438849 1838 ntBASIC20.84■□□□□ 0.93
CLCN3P51790 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.84■□□□□ 0.93
CLCN3P51790 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLCN3P51790 MCCD1P1-208ENST00000445732 328 ntBASIC20.84■□□□□ 0.93
CLCN3P51790 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.84■□□□□ 0.93
CLCN3P51790 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.84■□□□□ 0.93
CLCN3P51790 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLCN3P51790 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.84■□□□□ 0.93
CLCN3P51790 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.84■□□□□ 0.93
CLCN3P51790 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLCN3P51790 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLCN3P51790 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.84■□□□□ 0.93
CLCN3P51790 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.84■□□□□ 0.93
CLCN3P51790 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLCN3P51790 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLCN3P51790 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLCN3P51790 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.84■□□□□ 0.93
CLCN3P51790 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLCN3P51790 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLCN3P51790 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLCN3P51790 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
CLCN3P51790 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.83■□□□□ 0.93
CLCN3P51790 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLCN3P51790 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLCN3P51790 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CLCN3P51790 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLCN3P51790 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLCN3P51790 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLCN3P51790 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLCN3P51790 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLCN3P51790 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.83■□□□□ 0.93
CLCN3P51790 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.83■□□□□ 0.93
CLCN3P51790 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLCN3P51790 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.83■□□□□ 0.93
CLCN3P51790 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLCN3P51790 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CLCN3P51790 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.83■□□□□ 0.93
CLCN3P51790 AL671277.2-201ENST00000458060 996 ntBASIC20.83■□□□□ 0.93
CLCN3P51790 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
CLCN3P51790 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.83■□□□□ 0.93
CLCN3P51790 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.83■□□□□ 0.93
CLCN3P51790 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
CLCN3P51790 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.83■□□□□ 0.92
CLCN3P51790 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLCN3P51790 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLCN3P51790 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CLCN3P51790 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CLCN3P51790 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CLCN3P51790 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.83■□□□□ 0.92
CLCN3P51790 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLCN3P51790 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLCN3P51790 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CLCN3P51790 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.82■□□□□ 0.92
CLCN3P51790 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCN3P51790 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCN3P51790 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCN3P51790 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.82■□□□□ 0.92
CLCN3P51790 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCN3P51790 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLCN3P51790 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CLCN3P51790 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLCN3P51790 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.82■□□□□ 0.92
CLCN3P51790 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCN3P51790 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.82■□□□□ 0.92
CLCN3P51790 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CLCN3P51790 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCN3P51790 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCN3P51790 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCN3P51790 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.82■□□□□ 0.92
CLCN3P51790 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.82■□□□□ 0.92
CLCN3P51790 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.82■□□□□ 0.92
CLCN3P51790 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.82■□□□□ 0.92
CLCN3P51790 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLCN3P51790 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms