Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 AC062016.1-201ENST00000355719 319 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 RNU6-1010P-201ENST00000362757 107 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 RNU6-1286P-201ENST00000383871 107 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 RNU6-142P-201ENST00000384019 107 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 MIR9-1-201ENST00000385198 89 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 RNU6-308P-201ENST00000390957 107 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 MTCYBP2-201ENST00000407745 171 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 RNA5SP21-201ENST00000410917 96 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 CYCSP48-201ENST00000417124 323 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 MCFD2P1-201ENST00000417812 300 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 AL358075.3-201ENST00000426289 226 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 AL353997.1-201ENST00000432936 108 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 RPS29P6-201ENST00000438196 145 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 MTND4P19-201ENST00000446659 478 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 AC108938.1-201ENST00000451204 136 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 SNORD109B-201ENST00000458961 67 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 SNORD109A-201ENST00000459128 67 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 AC091874.1-201ENST00000511402 339 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 AL159153.1-201ENST00000619688 317 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 SNORA43.4-201ENST00000629559 138 ntBASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.16□□□□□ -1.9
PCDHA1Q9Y5I3 AP000560.1-201ENST00000624150 1937 ntBASIC3.15□□□□□ -1.9
PCDHA1Q9Y5I3 MIR26A1-201ENST00000362205 77 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-99P-201ENST00000364721 107 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AC117470.1-201ENST00000381974 330 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 CD24P4-201ENST00000382840 243 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-1032P-201ENST00000384100 107 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 RNY1P14-201ENST00000384426 108 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-1156P-201ENST00000410365 100 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 RNU2-23P-201ENST00000410545 195 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 MTCYBP10-201ENST00000424905 650 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AC063976.3-201ENST00000426849 329 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AC016632.1-201ENST00000503994 196 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AL590705.4-201ENST00000532209 134 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 HSPE1P4-201ENST00000550617 308 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AC105137.2-201ENST00000569073 466 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 MIR5571-201ENST00000577998 113 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 MIR3162-201ENST00000581818 82 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AC083806.3-201ENST00000614016 455 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AC103988.1-201ENST00000566382 2177 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 AC233981.2-201ENST00000611524 1614 ntBASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.15□□□□□ -1.91
PCDHA1Q9Y5I3 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 AC092268.1-201ENST00000342691 405 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 Y_RNA.162-201ENST00000363683 102 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-1027P-201ENST00000383998 107 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-968P-201ENST00000384076 107 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 RNU6-700P-201ENST00000391043 107 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 SAR1AP2-201ENST00000392696 594 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 RNU2-52P-201ENST00000410680 190 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 RPL30P12-201ENST00000474666 353 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 SNORA25.10-201ENST00000515926 124 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 Y_RNA.661-201ENST00000516003 99 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 AC115990.1-201ENST00000526957 301 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 MRPS36P4-201ENST00000534436 298 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 AC104581.2-201ENST00000572227 430 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 AC006504.6-201ENST00000590142 199 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 7SK.7-201ENST00000603504 247 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 AC016925.2-201ENST00000605108 242 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 AC107294.3-201ENST00000609211 526 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHA1Q9Y5I3 MTND5P27-201ENST00000428871 1720 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 AL109809.4-201ENST00000603520 2185 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 SNORD114-19-201ENST00000363072 75 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 Y_RNA.148-201ENST00000363557 117 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 RNU4-9P-201ENST00000364951 139 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 SNORA26.3-201ENST00000391119 136 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 AL512633.1-201ENST00000399931 655 ntBASIC3.13□□□□□ -1.91
PCDHA1Q9Y5I3 AL133475.1-201ENST00000404414 305 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms