Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC093010.3-201ENST00000570269 15214 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 RNU4-42P-201ENST00000364738 142 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 RNU6-1083P-201ENST00000384022 107 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 MIR491-201ENST00000384877 84 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 MIR190B-201ENST00000401119 79 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AL451074.5-201ENST00000415894 435 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 MTND2P23-201ENST00000422990 651 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AC092423.1-201ENST00000430165 186 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AL160004.2-201ENST00000432935 350 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 Z82188.1-201ENST00000436709 154 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AC006028.1-201ENST00000438379 402 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AC009296.1-201ENST00000443146 155 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 RN7SL807P-201ENST00000470923 297 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 RPL31P41-201ENST00000477967 372 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 RPL36AP48-201ENST00000485521 314 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AF186996.7-201ENST00000492781 209 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AIG1P1-201ENST00000503376 148 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 SNORA31.6-201ENST00000516241 130 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 RNU6-1045P-201ENST00000516321 107 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AC116312.1-201ENST00000606841 314 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 MIR1244-1-201ENST00000612829 85 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 MIR7112-201ENST00000616126 65 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AL138825.1-201ENST00000618587 192 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 MIR1244-3-201ENST00000635744 85 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 MIR1244-2-201ENST00000636449 85 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 MIR1244-4-202ENST00000636813 85 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AL359854.1-201ENST00000614203 1594 ntBASIC3.12□□□□□ -1.91
PCDHA3Q9Y5H8 AC005592.1-201ENST00000566527 1640 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 Y_RNA.145-201ENST00000363527 102 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 RNU6-17P-201ENST00000384245 107 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 SNORA54-201ENST00000384281 123 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 RNU6-18P-201ENST00000384527 107 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 RN7SKP220-201ENST00000410611 288 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 RN7SKP123-201ENST00000410732 291 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 RNA5SP120-201ENST00000410900 112 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 BMS1P22-201ENST00000414726 313 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 MTCO3P29-201ENST00000432119 779 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 AC087477.1-201ENST00000465747 340 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 RPL22P13-201ENST00000493291 347 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 MRPS36P2-201ENST00000512569 299 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 RNU6-567P-201ENST00000516746 107 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 Y_RNA.706-201ENST00000516933 99 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 SNORD58B-201ENST00000607313 66 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 MIR4272-201ENST00000635924 64 ntBASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.11□□□□□ -1.91
PCDHA3Q9Y5H8 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 MTND4P1-201ENST00000457501 1466 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 MIR186-201ENST00000384988 86 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 MIR483-201ENST00000385070 76 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 AL031121.1-201ENST00000406553 254 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 AC097463.2-201ENST00000421074 142 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 AIMP1P2-201ENST00000425294 312 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 AC112771.1-201ENST00000463581 102 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 AC117440.1-201ENST00000474107 571 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 RPS29P2-201ENST00000479278 136 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 AC021146.2-201ENST00000504736 556 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 RNU5F-2P-201ENST00000516066 82 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 RNU6-911P-201ENST00000516523 104 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 SNORA40.14-201ENST00000516543 86 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 SNORA31.26-201ENST00000517250 137 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 MIR4680-201ENST00000580906 66 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 AC008739.2-201ENST00000597006 317 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 AC243829.7-201ENST00000633081 225 ntBASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
PCDHA3Q9Y5H8 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 RNU6-874P-201ENST00000362390 105 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 Y_RNA.40-201ENST00000362645 93 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 RNU1-35P-201ENST00000362782 153 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 SNORA38.1-201ENST00000364172 131 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 RNU1-57P-201ENST00000384491 166 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 SNORA69.1-201ENST00000390904 137 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 RNU6-985P-201ENST00000410182 104 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 Y_RNA.605-201ENST00000410577 105 ntBASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.09□□□□□ -1.91
PCDHA3Q9Y5H8 AL590135.1-201ENST00000422215 156 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms