Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC078809.1-201ENST00000427601 140 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 TIMM9P3-201ENST00000428659 274 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 SNAP23P1-201ENST00000433229 246 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 IFNA20P-201ENST00000436840 528 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.92□□□□□ -2.1
LHX3Q9UBR4 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.92□□□□□ -2.1
LHX3Q9UBR4 MTND3P16-201ENST00000452205 344 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.92□□□□□ -2.1
LHX3Q9UBR4 RPL21P99-201ENST00000480369 423 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 AC019235.1-201ENST00000503847 207 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 RNU6-189P-201ENST00000516120 101 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 RNU6-314P-201ENST00000516574 104 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 RNU6-965P-201ENST00000516721 96 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 CENPUP1-201ENST00000526649 1202 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.92□□□□□ -2.1
LHX3Q9UBR4 HSPE1P4-201ENST00000550617 308 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 AC104984.5-201ENST00000586878 94 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.92□□□□□ -2.1
LHX3Q9UBR4 AL034555.1-201ENST00000604816 211 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 AF250324.2-201ENST00000608299 610 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 AC015540.1-201ENST00000615828 501 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 SNORD98-201ENST00000636377 67 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.92□□□□□ -2.1
LHX3Q9UBR4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
LHX3Q9UBR4 AL356292.1-201ENST00000283110 373 ntBASIC1.91□□□□□ -2.1
LHX3Q9UBR4 RNU6-1159P-201ENST00000362933 107 ntBASIC1.91□□□□□ -2.1
LHX3Q9UBR4 SNORD32A-201ENST00000364805 84 ntBASIC1.91□□□□□ -2.1
LHX3Q9UBR4 RNU6-142P-201ENST00000384019 107 ntBASIC1.91□□□□□ -2.1
LHX3Q9UBR4 RNU6-483P-201ENST00000384088 108 ntBASIC1.91□□□□□ -2.1
LHX3Q9UBR4 RNU6-648P-201ENST00000410190 107 ntBASIC1.91□□□□□ -2.1
LHX3Q9UBR4 RNU6-1068P-201ENST00000410958 103 ntBASIC1.91□□□□□ -2.1
LHX3Q9UBR4 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.91□□□□□ -2.1
LHX3Q9UBR4 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.91□□□□□ -2.1
LHX3Q9UBR4 PRELID3BP1-201ENST00000457142 540 ntBASIC1.91□□□□□ -2.1
LHX3Q9UBR4 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.91□□□□□ -2.1
LHX3Q9UBR4 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC1.91□□□□□ -2.1
LHX3Q9UBR4 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.91□□□□□ -2.1
LHX3Q9UBR4 AK6P1-201ENST00000540219 478 ntBASIC1.91□□□□□ -2.1
LHX3Q9UBR4 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.91□□□□□ -2.1
LHX3Q9UBR4 MIR6840-201ENST00000611937 71 ntBASIC1.91□□□□□ -2.1
LHX3Q9UBR4 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.91□□□□□ -2.1
LHX3Q9UBR4 AC103705.1-201ENST00000619013 241 ntBASIC1.91□□□□□ -2.1
LHX3Q9UBR4 AC099654.12-201ENST00000639868 649 ntBASIC1.91□□□□□ -2.1
LHX3Q9UBR4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.91□□□□□ -2.1
LHX3Q9UBR4 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.91□□□□□ -2.1
LHX3Q9UBR4 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.9□□□□□ -2.1
LHX3Q9UBR4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.9□□□□□ -2.11
LHX3Q9UBR4 RNU4-15P-201ENST00000362613 141 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 RNU6-623P-201ENST00000363143 105 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 RNU4-56P-201ENST00000364700 142 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 MIR518A2-201ENST00000384966 87 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AC019129.1-201ENST00000403786 261 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 RN7SKP61-201ENST00000410642 295 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AL590135.1-201ENST00000422215 156 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AL445685.2-201ENST00000422551 342 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AC019205.3-201ENST00000424573 156 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.9□□□□□ -2.11
LHX3Q9UBR4 MTCO2P3-201ENST00000442543 421 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AC016700.2-201ENST00000446011 156 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AC245102.2-201ENST00000448956 180 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.9□□□□□ -2.11
LHX3Q9UBR4 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AC015911.1-201ENST00000495111 156 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AC091885.1-201ENST00000506658 268 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 RPL39P5-202ENST00000512505 151 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 RNU6-1281P-201ENST00000516223 105 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 RNU6-506P-201ENST00000516553 94 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AL121757.2-201ENST00000611223 313 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 MIR6845-201ENST00000613182 61 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.9□□□□□ -2.11
LHX3Q9UBR4 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
LHX3Q9UBR4 AC092268.1-201ENST00000342691 405 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 SNORD115-3-201ENST00000363100 82 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 RNU6-743P-201ENST00000364151 106 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 MIR29C-201ENST00000385231 88 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AL590002.1-201ENST00000406554 418 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 MIR1294-201ENST00000408503 142 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.89□□□□□ -2.11
LHX3Q9UBR4 ARL5AP1-201ENST00000418991 388 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.89□□□□□ -2.11
LHX3Q9UBR4 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AC145146.1-201ENST00000496370 254 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.89□□□□□ -2.11
LHX3Q9UBR4 PTP4A1P4-201ENST00000512479 322 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 RNA5SP182-201ENST00000516064 82 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AC087854.1-201ENST00000519706 414 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 RNU6-323P-201ENST00000521915 107 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 TRAV32-201ENST00000553993 340 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.89□□□□□ -2.11
LHX3Q9UBR4 HMGB1P33-201ENST00000563485 527 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AP001836.1-201ENST00000604675 523 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AC012557.2-201ENST00000605919 418 ntBASIC1.89□□□□□ -2.11
LHX3Q9UBR4 AC004492.1-201ENST00000607036 742 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms