Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AL136310.1-201ENST00000404926 654 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 AC027119.1-201ENST00000440877 241 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 AL133373.1-201ENST00000497098 94 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.58□□□□□ -2.32
SCN3AQ9NY46 SNORA3.4-201ENST00000515969 96 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC0.58□□□□□ -2.32
SCN3AQ9NY46 SNORA77B-201ENST00000578179 125 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 AC091135.1-201ENST00000585943 307 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 AC078795.2-201ENST00000602835 1252 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 AC121334.2-201ENST00000605387 271 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 AC008945.2-201ENST00000606056 604 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 SNORA4.1-201ENST00000364263 144 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 MIR100-201ENST00000385259 80 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 MTCO3P41-201ENST00000414801 328 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 PIGFP2-201ENST00000421400 651 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AL583843.1-201ENST00000456070 346 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AC105313.1-201ENST00000509121 353 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AP001893.2-201ENST00000526949 202 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AC019288.1-201ENST00000557918 224 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 DEFB131E-202ENST00000602581 683 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 MIR3976-201ENST00000606807 139 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.57□□□□□ -2.32
SCN3AQ9NY46 RNU6-621P-201ENST00000364752 109 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 SNORA29-201ENST00000384183 140 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 RPS20P2-201ENST00000402520 389 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 C8orf59P1-201ENST00000429930 303 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AC007969.2-201ENST00000441891 191 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.57□□□□□ -2.32
SCN3AQ9NY46 snoU13.30-201ENST00000458951 104 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 RNU6-1132P-201ENST00000459214 107 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 snoU109.3-201ENST00000459477 145 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AC011005.2-201ENST00000487324 359 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
SCN3AQ9NY46 SNORA31.4-201ENST00000516049 129 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 RN7SKP88-201ENST00000516847 250 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
SCN3AQ9NY46 BNIP3P6-201ENST00000549284 499 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AC025678.1-201ENST00000567861 338 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AL590095.2-201ENST00000604136 117 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 7SK.8-201ENST00000612110 250 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 7SK.11-201ENST00000615477 250 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 MIR6513-201ENST00000621188 64 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 7SK.13-201ENST00000622040 250 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AL138955.1-201ENST00000622881 1040 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 OR4G3P-201ENST00000633500 913 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 AL445523.1-201ENST00000451184 1362 ntBASIC0.57□□□□□ -2.32
SCN3AQ9NY46 RNU6-968P-201ENST00000384076 107 ntBASIC0.56□□□□□ -2.32
SCN3AQ9NY46 RPL23AP32-201ENST00000395315 459 ntBASIC0.56□□□□□ -2.32
SCN3AQ9NY46 AL358176.2-201ENST00000425769 204 ntBASIC0.56□□□□□ -2.32
SCN3AQ9NY46 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.56□□□□□ -2.32
SCN3AQ9NY46 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC0.56□□□□□ -2.32
SCN3AQ9NY46 RNU6-567P-201ENST00000516746 107 ntBASIC0.56□□□□□ -2.32
SCN3AQ9NY46 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.56□□□□□ -2.32
SCN3AQ9NY46 TMF1P1-201ENST00000576058 373 ntBASIC0.56□□□□□ -2.32
SCN3AQ9NY46 MIR1273G-201ENST00000577677 100 ntBASIC0.56□□□□□ -2.32
SCN3AQ9NY46 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.56□□□□□ -2.32
SCN3AQ9NY46 Y_RNA.30-201ENST00000362572 97 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 SNORD56.1-201ENST00000362913 68 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 Y_RNA.132-201ENST00000363421 102 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 RNU4-1-201ENST00000363925 141 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 SNORA63D-201ENST00000364359 132 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 SNORD116.1-201ENST00000365628 92 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 RNA5SP201-201ENST00000410316 124 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 RNA5SP111-201ENST00000411386 101 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 ARL5AP1-201ENST00000418991 388 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.55□□□□□ -2.32
SCN3AQ9NY46 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AC011979.2-201ENST00000527568 352 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC0.55□□□□□ -2.32
SCN3AQ9NY46 MIR4661-201ENST00000582720 75 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AL590229.1-201ENST00000603497 542 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AL353149.1-201ENST00000610667 244 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AC008147.4-201ENST00000617570 1204 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 RNU6-743P-201ENST00000364151 106 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
SCN3AQ9NY46 Y_RNA.465-201ENST00000384293 102 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 MIR10A-201ENST00000385043 110 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 RNU6-298P-201ENST00000390888 96 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 SNORD115.1-201ENST00000391109 76 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AC069282.1-201ENST00000411911 526 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AL031779.1-201ENST00000415663 330 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.55□□□□□ -2.32
SCN3AQ9NY46 ZNF736P1Y-201ENST00000440402 1276 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 MTND5P2-201ENST00000442927 1142 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 RNU6-201P-201ENST00000517100 61 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 SUMO2P18-201ENST00000518873 252 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.55□□□□□ -2.32
SCN3AQ9NY46 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.55□□□□□ -2.32
SCN3AQ9NY46 MTND4LP25-201ENST00000570218 163 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AC136932.1-201ENST00000574771 208 ntBASIC0.55□□□□□ -2.32
SCN3AQ9NY46 AL158042.1-201ENST00000605338 460 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms