Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 RNU1-51P-201ENST00000365345 176 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 RNU6-142P-201ENST00000384019 107 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 AL162578.1-201ENST00000406202 378 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 RNU2-40P-201ENST00000410833 196 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 AP000275.1-201ENST00000411943 390 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 AC009963.1-201ENST00000417265 157 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 RPL23AP95-201ENST00000426806 265 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 MTND1P34-201ENST00000438556 671 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 AL353689.1-201ENST00000438895 199 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.99□□□□□ -2.09
SSX3Q99909 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.99□□□□□ -2.09
SSX3Q99909 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.99□□□□□ -2.09
SSX3Q99909 AC008413.1-201ENST00000511864 177 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 RNU6-1332P-201ENST00000516666 104 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 AC018630.3-201ENST00000542637 96 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.99□□□□□ -2.09
SSX3Q99909 MIR4448-201ENST00000584360 86 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.99□□□□□ -2.09
SSX3Q99909 AC068137.4-201ENST00000638485 296 ntBASIC1.99□□□□□ -2.09
SSX3Q99909 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
SSX3Q99909 MTND4P23-201ENST00000447723 1363 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SSX3Q99909 RNU4-15P-201ENST00000362613 141 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 RNY4P14-201ENST00000363656 96 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 RNA5SP456-201ENST00000364002 114 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 Y_RNA.256-201ENST00000364594 104 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 Y_RNA.504-201ENST00000384481 104 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 BTF3L4P2-201ENST00000392798 346 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 AL359511.1-201ENST00000402970 211 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 RNU2-48P-201ENST00000410694 191 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 Y_RNA.615-201ENST00000410769 117 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.98□□□□□ -2.09
SSX3Q99909 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.98□□□□□ -2.09
SSX3Q99909 C8orf59P1-201ENST00000429930 303 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 CBX3P6-201ENST00000430257 527 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 AL133396.1-201ENST00000432048 687 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.98□□□□□ -2.09
SSX3Q99909 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.98□□□□□ -2.09
SSX3Q99909 RPL23AP3-201ENST00000453844 468 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 U8.21-201ENST00000459536 136 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 AC145146.1-201ENST00000496370 254 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 RN7SL636P-201ENST00000497504 294 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 AC091874.1-201ENST00000511402 339 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 Y_RNA.665-201ENST00000516177 98 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 SNORA31.16-201ENST00000516773 139 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 RNU6-612P-201ENST00000516909 102 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.98□□□□□ -2.09
SSX3Q99909 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC1.98□□□□□ -2.09
SSX3Q99909 MIR4299-201ENST00000577899 72 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 AC243960.4-201ENST00000600532 288 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 AC068944.2-201ENST00000610373 403 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SSX3Q99909 AC009487.4-201ENST00000624969 3585 ntBASIC1.98□□□□□ -2.09
SSX3Q99909 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
SSX3Q99909 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
SSX3Q99909 RNU6-743P-201ENST00000364151 106 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 Y_RNA.450-201ENST00000384198 113 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 RNU6-611P-201ENST00000384276 104 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 MIR518C-201ENST00000384822 101 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 MIR450B-201ENST00000401182 78 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.97□□□□□ -2.09
SSX3Q99909 MTCO1P21-201ENST00000416634 589 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 HMGN2P19-201ENST00000425149 265 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 NDUFA5P4-201ENST00000436704 385 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 IFNA20P-201ENST00000436840 528 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.97□□□□□ -2.09
SSX3Q99909 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.97□□□□□ -2.09
SSX3Q99909 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.97□□□□□ -2.09
SSX3Q99909 RNA5SP233-201ENST00000459153 113 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 RPL9P9-202ENST00000466501 579 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 AC092436.3-201ENST00000511788 257 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 RNA5SP24-201ENST00000516478 95 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 AC021269.2-201ENST00000532318 330 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.97□□□□□ -2.09
SSX3Q99909 TRAV32-201ENST00000553993 340 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.97□□□□□ -2.09
SSX3Q99909 AL627230.6-201ENST00000611129 280 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 AL590808.1-201ENST00000618696 141 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 AC024614.3-201ENST00000637860 256 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 AC009541.1-201ENST00000438279 2662 ntBASIC1.97□□□□□ -2.09
SSX3Q99909 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.97□□□□□ -2.09
SSX3Q99909 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.97□□□□□ -2.09
SSX3Q99909 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.09
SSX3Q99909 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.96□□□□□ -2.1
SSX3Q99909 RNU6-877P-201ENST00000383868 107 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 SNORA41-201ENST00000384675 132 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 Y_RNA.573-201ENST00000384763 105 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 SNORA40.19-201ENST00000390846 128 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 RNU6-332P-201ENST00000391193 108 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC1.96□□□□□ -2.1
SSX3Q99909 SNRPEP10-201ENST00000420249 274 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 UBE2V1P4-201ENST00000425374 344 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 PRELID3BP1-201ENST00000457142 540 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 AMD1P1-201ENST00000457220 922 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 HMGN2P26-201ENST00000463169 339 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 RPL23AP42-201ENST00000471152 471 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 TRBV12-1-201ENST00000479785 344 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 AC025465.4-201ENST00000513422 638 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 RNA5SP364-201ENST00000516938 78 ntBASIC1.96□□□□□ -2.1
SSX3Q99909 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms