Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RNU6-405P-201ENST00000516637 110 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 RNA5SP137-201ENST00000516833 135 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 SNORA31.23-201ENST00000517219 133 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.56□□□□□ -2.16
CDX2Q99626 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.56□□□□□ -2.16
CDX2Q99626 AP004607.1-201ENST00000524456 203 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.56□□□□□ -2.16
CDX2Q99626 BNIP3P30-201ENST00000601184 574 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AC091805.2-201ENST00000603848 235 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AL355297.2-201ENST00000604792 129 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AC021646.1-201ENST00000605469 484 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AL121992.2-201ENST00000606262 256 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AC092954.2-201ENST00000609103 430 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 RMST_4.1-201ENST00000616886 107 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 AL157786.1-207ENST00000627771 695 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
CDX2Q99626 ZNF702P-202ENST00000434269 1966 ntBASIC1.56□□□□□ -2.16
CDX2Q99626 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
CDX2Q99626 AC138393.1-203ENST00000327086 343 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 RNY4P34-201ENST00000364779 95 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 RNU6-517P-201ENST00000384362 110 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 RNU6-1215P-201ENST00000384441 102 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC068050.1-201ENST00000394891 380 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 Y_RNA.598-201ENST00000410480 95 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 RNU2-48P-201ENST00000410694 191 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 RNU2-16P-201ENST00000410712 136 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 RPS3AP3-201ENST00000411933 242 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 ELOCP4-201ENST00000420090 333 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.55□□□□□ -2.16
CDX2Q99626 MTATP6P16-201ENST00000434543 526 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC009961.2-201ENST00000435771 251 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.55□□□□□ -2.16
CDX2Q99626 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.55□□□□□ -2.16
CDX2Q99626 AC079448.1-201ENST00000449377 373 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.55□□□□□ -2.16
CDX2Q99626 RPL23AP3-201ENST00000453844 468 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.55□□□□□ -2.16
CDX2Q99626 snoU13.14-201ENST00000459372 104 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 SNORD42A-201ENST00000459584 64 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 HMGB1P30-201ENST00000492455 606 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 RBBP4P6-201ENST00000508098 202 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC117522.1-201ENST00000509821 380 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.55□□□□□ -2.16
CDX2Q99626 AP003392.2-201ENST00000527269 208 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 ADI1P3-201ENST00000549509 470 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 MIR4299-201ENST00000577899 72 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.55□□□□□ -2.16
CDX2Q99626 AC005771.1-201ENST00000585581 349 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC080078.2-201ENST00000603766 501 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC016727.2-201ENST00000603988 621 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AL136363.2-201ENST00000604173 851 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC107304.1-201ENST00000604229 296 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC090578.1-201ENST00000604955 591 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC008250.2-201ENST00000615261 205 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC093648.1-201ENST00000623546 606 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.55□□□□□ -2.16
CDX2Q99626 MIR3529-201ENST00000637713 78 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 AC121333.1-201ENST00000567488 2709 ntBASIC1.55□□□□□ -2.16
CDX2Q99626 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.55□□□□□ -2.16
CDX2Q99626 RNU1-23P-201ENST00000363361 144 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 RNA5SP240-201ENST00000365355 128 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 Y_RNA.372-201ENST00000365599 102 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 Y_RNA.409-201ENST00000383990 98 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 MIR186-201ENST00000384988 86 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 MIR10A-201ENST00000385043 110 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 MRPL42P2-201ENST00000403169 426 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 RNU2-3P-201ENST00000410144 191 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 UBE2V1P10-201ENST00000414685 269 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 MTND3P17-201ENST00000416968 344 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 RPL31P35-201ENST00000431058 377 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.54□□□□□ -2.16
CDX2Q99626 CYP2C59P-201ENST00000457790 269 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.54□□□□□ -2.16
CDX2Q99626 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.54□□□□□ -2.16
CDX2Q99626 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.54□□□□□ -2.16
CDX2Q99626 AL117351.2-201ENST00000513571 157 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 SNORA18.6-201ENST00000516792 115 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 RNU6-430P-201ENST00000517078 107 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC1.54□□□□□ -2.16
CDX2Q99626 AC084364.2-201ENST00000546924 395 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.54□□□□□ -2.16
CDX2Q99626 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC1.54□□□□□ -2.16
CDX2Q99626 IMMP1LP2-201ENST00000552954 492 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 AC245505.1-201ENST00000556398 224 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 AC090897.2-201ENST00000581715 130 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 AC122108.2-201ENST00000611946 526 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 RMST_7.1-201ENST00000621935 268 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 AC138649.3-201ENST00000622154 254 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 SCARNA4-202ENST00000625402 129 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1.54□□□□□ -2.16
CDX2Q99626 MTND5P26-201ENST00000426018 1752 ntBASIC1.54□□□□□ -2.16
CDX2Q99626 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.54□□□□□ -2.16
CDX2Q99626 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.53□□□□□ -2.16
CDX2Q99626 RNA5SP276-201ENST00000362580 94 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 Y_RNA.68-201ENST00000362881 102 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 SNORA25B-201ENST00000365507 128 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 RNU6-259P-201ENST00000383999 107 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 HMGN2P39-201ENST00000398005 273 ntBASIC1.53□□□□□ -2.16
CDX2Q99626 CALM2P3-201ENST00000400429 449 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms