Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC025811.1-201ENST00000604312 472 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AP000654.2-201ENST00000605633 586 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 AC005296.1-201ENST00000616145 209 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.79□□□□□ -2.12
VPS35Q96QK1 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.79□□□□□ -2.12
VPS35Q96QK1 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
VPS35Q96QK1 RNU6-142P-201ENST00000384019 107 ntBASIC1.78□□□□□ -2.12
VPS35Q96QK1 SNORA40.18-201ENST00000391200 128 ntBASIC1.78□□□□□ -2.12
VPS35Q96QK1 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.78□□□□□ -2.12
VPS35Q96QK1 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.78□□□□□ -2.12
VPS35Q96QK1 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.78□□□□□ -2.12
VPS35Q96QK1 AC002486.1-201ENST00000435098 391 ntBASIC1.78□□□□□ -2.12
VPS35Q96QK1 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.78□□□□□ -2.12
VPS35Q96QK1 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.78□□□□□ -2.12
VPS35Q96QK1 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.78□□□□□ -2.12
VPS35Q96QK1 RPS3AP17-201ENST00000472594 777 ntBASIC1.78□□□□□ -2.12
VPS35Q96QK1 MIR449C-201ENST00000516047 92 ntBASIC1.78□□□□□ -2.12
VPS35Q96QK1 SNORA31.16-201ENST00000516773 139 ntBASIC1.78□□□□□ -2.12
VPS35Q96QK1 HSPE1P4-201ENST00000550617 308 ntBASIC1.78□□□□□ -2.12
VPS35Q96QK1 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.78□□□□□ -2.12
VPS35Q96QK1 AC004223.2-201ENST00000590309 544 ntBASIC1.78□□□□□ -2.12
VPS35Q96QK1 AC110760.3-201ENST00000598794 467 ntBASIC1.78□□□□□ -2.12
VPS35Q96QK1 uc_338.34-201ENST00000617467 174 ntBASIC1.78□□□□□ -2.12
VPS35Q96QK1 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.78□□□□□ -2.12
VPS35Q96QK1 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
VPS35Q96QK1 Y_RNA.296-201ENST00000364930 108 ntBASIC1.77□□□□□ -2.13
VPS35Q96QK1 MIR504-201ENST00000385065 83 ntBASIC1.77□□□□□ -2.13
VPS35Q96QK1 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
VPS35Q96QK1 RN7SKP61-201ENST00000410642 295 ntBASIC1.77□□□□□ -2.13
VPS35Q96QK1 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS35Q96QK1 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.77□□□□□ -2.13
VPS35Q96QK1 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.77□□□□□ -2.13
VPS35Q96QK1 HMGB1P29-201ENST00000505659 499 ntBASIC1.77□□□□□ -2.13
VPS35Q96QK1 AC116337.1-201ENST00000509680 687 ntBASIC1.77□□□□□ -2.13
VPS35Q96QK1 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.77□□□□□ -2.13
VPS35Q96QK1 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS35Q96QK1 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS35Q96QK1 AK6P1-201ENST00000540219 478 ntBASIC1.77□□□□□ -2.13
VPS35Q96QK1 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
VPS35Q96QK1 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.77□□□□□ -2.13
VPS35Q96QK1 MIR4255-201ENST00000579351 72 ntBASIC1.77□□□□□ -2.13
VPS35Q96QK1 AC011494.1-201ENST00000596454 237 ntBASIC1.77□□□□□ -2.13
VPS35Q96QK1 RNU6-85P-201ENST00000605989 107 ntBASIC1.77□□□□□ -2.13
VPS35Q96QK1 AL022345.1-201ENST00000607292 135 ntBASIC1.77□□□□□ -2.13
VPS35Q96QK1 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.77□□□□□ -2.13
VPS35Q96QK1 Y_RNA.359-201ENST00000365498 102 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 RNU6-1158P-201ENST00000391167 107 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 AL357139.1-201ENST00000407792 426 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 RPS20P15-201ENST00000412792 311 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
VPS35Q96QK1 AL353193.1-201ENST00000421444 268 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 RPL23AP95-201ENST00000426806 265 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 VN1R108P-201ENST00000431580 830 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 AC098826.2-201ENST00000452011 651 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 PPP1R2P5-201ENST00000457256 603 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 AC087884.1-201ENST00000469738 328 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 AL163973.1-201ENST00000484753 577 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.76□□□□□ -2.13
VPS35Q96QK1 AP005639.2-201ENST00000527592 928 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.76□□□□□ -2.13
VPS35Q96QK1 AC090115.3-201ENST00000553218 849 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 AC006362.1-201ENST00000567392 174 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 AC010928.2-201ENST00000588017 287 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 CYP2C61P-201ENST00000604072 290 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 AL356157.2-201ENST00000605122 111 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 AC007684.1-201ENST00000609671 477 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 AL354950.2-201ENST00000617939 290 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 AC084768.2-201ENST00000622736 221 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
VPS35Q96QK1 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
VPS35Q96QK1 AC090582.1-201ENST00000636321 199 ntBASIC1.76□□□□□ -2.13
VPS35Q96QK1 AC092268.1-201ENST00000342691 405 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 Y_RNA.1-201ENST00000352915 104 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 RNU4-56P-201ENST00000364700 142 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 Y_RNA.381-201ENST00000365666 102 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 RNY3P9-201ENST00000384727 106 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
VPS35Q96QK1 SNORA26.3-201ENST00000391119 136 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 AL606923.1-201ENST00000406616 190 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 RNA5SP501-201ENST00000410990 112 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.75□□□□□ -2.13
VPS35Q96QK1 CDK8P2-201ENST00000415020 547 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.75□□□□□ -2.13
VPS35Q96QK1 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS35Q96QK1 AC078809.1-201ENST00000427601 140 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 MTCO2P16-201ENST00000436962 677 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.75□□□□□ -2.13
VPS35Q96QK1 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.75□□□□□ -2.13
VPS35Q96QK1 AC104564.1-201ENST00000493028 407 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 CCDC34P1-201ENST00000507441 517 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 AC108078.1-201ENST00000508073 725 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 RNA5SP490-201ENST00000517141 136 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 MTND4P7-201ENST00000523876 130 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 DEFB122-202ENST00000569013 197 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 MIR4419B-201ENST00000577260 68 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.75□□□□□ -2.13
VPS35Q96QK1 BNIP3P25-201ENST00000596023 559 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 AC012507.3-201ENST00000603556 477 ntBASIC1.75□□□□□ -2.13
VPS35Q96QK1 AC009509.4-201ENST00000619202 509 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 133.8 ms