Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 AC074117.2-201ENST00000417130 397 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 AC124916.1-201ENST00000444020 547 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 RPL31P41-201ENST00000477967 372 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 MRPS36P2-201ENST00000512569 299 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 RNU6-1338P-201ENST00000516328 91 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 Y_RNA.713-201ENST00000517013 96 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 RNU6-1212P-201ENST00000517023 104 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 AC005476.1-201ENST00000554427 397 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 MIR4425-201ENST00000580572 84 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 AC006077.1-201ENST00000604746 343 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 MIR8076-201ENST00000611401 83 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 AC127459.3-201ENST00000624328 466 ntBASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CLIP3Q96DZ5 CEP170P1-201ENST00000502249 4587 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 SNORD81.1-201ENST00000363064 77 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 U3.6-201ENST00000363622 211 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 RNU6-336P-201ENST00000364891 107 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 RNU6-487P-201ENST00000365430 104 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 RNU6-662P-201ENST00000384253 104 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 MIR23A-201ENST00000385245 73 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 RPS29P13-201ENST00000402041 169 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 MTATP6P29-201ENST00000415057 132 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 RPL23AP22-201ENST00000437556 453 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 AC087190.1-201ENST00000484462 480 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 AC107032.1-201ENST00000485945 480 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 RN7SKP209-201ENST00000516888 304 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 AL442163.3-201ENST00000554110 156 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 AC011471.1-201ENST00000585766 187 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 RNU6-91P-201ENST00000607774 107 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 uc_338.14-201ENST00000613162 166 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 AC243829.7-201ENST00000633081 225 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 U6.92-201ENST00000636464 89 ntBASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
CLIP3Q96DZ5 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 SNORD56.1-201ENST00000362913 68 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 Y_RNA.200-201ENST00000364018 102 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 Y_RNA.541-201ENST00000384640 113 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 RPL21P75-201ENST00000396599 483 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 RPL21P28-201ENST00000401418 483 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 MIR548I2-201ENST00000408348 149 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 AL590556.1-201ENST00000423231 483 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 MTCO3P29-201ENST00000432119 779 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 AC009969.1-201ENST00000438726 172 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 RPL21P39-201ENST00000463605 483 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 RPS29P27-201ENST00000463711 170 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 AC132942.1-201ENST00000486753 483 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 AC093591.1-201ENST00000491435 481 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 RPL21P16-201ENST00000495531 483 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 RNA5SP380-201ENST00000517190 98 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 SNORA31.23-201ENST00000517219 133 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 CBX3P4-201ENST00000538909 354 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 MIR3133-201ENST00000583157 78 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 BX284668.6-201ENST00000606899 438 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 AC005046.1-201ENST00000608515 625 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 MIR376A1-201ENST00000616574 68 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 U6.105-201ENST00000637379 88 ntBASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CLIP3Q96DZ5 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 RNU6-545P-201ENST00000362681 104 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 Y_RNA.54-201ENST00000362766 105 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 RNU6-1266P-201ENST00000362794 105 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 RNU6-125P-201ENST00000384505 107 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 MIR1289-1-201ENST00000408836 144 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 RNU6-1245P-201ENST00000411130 106 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 CYCSP4-201ENST00000429682 331 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 BX679664.1-201ENST00000434429 253 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 NDUFB1P1-201ENST00000435191 180 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 AL138752.1-201ENST00000452964 351 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 RPL21P10-201ENST00000463521 490 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 SEM1P1-201ENST00000506694 209 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 SNORA70.18-201ENST00000516696 98 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 AP002770.2-201ENST00000543613 532 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 RPL23AP78-201ENST00000599928 470 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 AC007179.3-201ENST00000604976 235 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 AC019159.1-201ENST00000605094 187 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 RBBP8P1-201ENST00000449447 1844 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 AL513302.2-201ENST00000562313 1842 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 161.2 ms