Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AL355143.1-201ENST00000407101 841 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 MIR548J-201ENST00000408833 112 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 RNU2-3P-201ENST00000410144 191 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 CST2P1-201ENST00000425770 87 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 AL589872.1-201ENST00000426602 288 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 ART2BP-201ENST00000453501 499 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 MTCO2P29-201ENST00000465212 189 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 AL049829.1-201ENST00000465411 156 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 AC097473.1-201ENST00000508142 408 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 HSPE1P4-201ENST00000550617 308 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 MIR4509-3-201ENST00000578671 94 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 MIR4509-2-201ENST00000583920 94 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 AC022709.1-201ENST00000615967 87 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 MIR4509-1-201ENST00000618224 94 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 U4.7-201ENST00000638126 106 ntBASIC0.96□□□□□ -2.26
CCDC112Q8NEF3 SNORD33-201ENST00000362761 85 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 RNU5E-7P-201ENST00000365290 117 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 RNU6-61P-201ENST00000365528 109 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 MIR532-201ENST00000385025 91 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 MIR146A-201ENST00000385201 99 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 MTCYBP36-201ENST00000404146 440 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 RPL21P111-201ENST00000418453 477 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC007283.2-201ENST00000424739 197 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AL591043.1-201ENST00000432461 424 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC000111.3-201ENST00000433478 193 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 RPS27AP8-201ENST00000452665 445 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC145146.1-201ENST00000496370 254 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC112204.1-201ENST00000502591 103 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC022447.4-201ENST00000504053 364 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC010587.1-201ENST00000505809 469 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 MTND3P25-201ENST00000509243 135 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 RN7SKP265-201ENST00000516448 223 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC115990.1-201ENST00000526957 301 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AP003181.2-201ENST00000528941 181 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC073539.2-201ENST00000597113 165 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC105148.1-201ENST00000604961 409 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AC097372.5-201ENST00000623665 376 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 MIR6767-201ENST00000637302 66 ntBASIC0.95□□□□□ -2.26
CCDC112Q8NEF3 AL391994.1-201ENST00000254724 282 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 Y_RNA.112-201ENST00000363250 102 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 RNU6-1200P-201ENST00000384162 107 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 RNU6-906P-201ENST00000384700 70 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 MIR558-201ENST00000384920 94 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 RNU2-39P-201ENST00000410604 198 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 RN7SKP61-201ENST00000410642 295 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 CYCSP33-201ENST00000414485 327 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AC137499.1-201ENST00000427602 88 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 HSPE1P9-201ENST00000440046 311 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 RPS27P1-201ENST00000450552 247 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AC091951.3-201ENST00000504093 246 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AC103851.1-201ENST00000506833 274 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 ARL2BPP4-201ENST00000506854 471 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 MTND3P5-201ENST00000512798 333 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 MTND4LP18-201ENST00000526864 291 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AC091489.2-201ENST00000566263 604 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AC008752.3-201ENST00000588113 712 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 NIFKP6-201ENST00000598115 845 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AP003465.2-201ENST00000602571 373 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AL034555.1-201ENST00000604816 211 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AL031775.1-201ENST00000607014 887 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 AC006927.4-201ENST00000639187 543 ntBASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
CCDC112Q8NEF3 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 Y_RNA.18-201ENST00000362461 102 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 Y_RNA.22-201ENST00000362492 102 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 RNU6-527P-201ENST00000363425 104 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 MIR548B-201ENST00000385247 97 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 SNORA12.2-201ENST00000391040 156 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 RNU6-607P-201ENST00000411283 108 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 HMGN1P14-201ENST00000412459 517 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 AL161935.2-201ENST00000414627 60 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 EIF1P1-201ENST00000421436 341 ntBASIC0.93□□□□□ -2.26
CCDC112Q8NEF3 MED13P1-201ENST00000428342 171 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 528.4 ms