Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 U6.104-201ENST00000637979 90 ntBASIC3.2□□□□□ -1.9
SLC44A3Q8N4M1 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SLC44A3Q8N4M1 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SLC44A3Q8N4M1 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
SLC44A3Q8N4M1 Z75746.1-201ENST00000440243 2080 ntBASIC3.2□□□□□ -1.9
SLC44A3Q8N4M1 MIR30E-201ENST00000362104 92 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 RNA5SP432-201ENST00000362480 116 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 Y_RNA.84-201ENST00000363011 104 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 AP002088.1-201ENST00000382740 395 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 Y_RNA.405-201ENST00000383979 100 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 Y_RNA.451-201ENST00000384200 100 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 Y_RNA.524-201ENST00000384564 100 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 Y_RNA.561-201ENST00000384694 100 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 MIR325-201ENST00000385260 98 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 RNU6-1203P-201ENST00000410703 110 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 RNU2-25P-201ENST00000411041 191 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 AL358453.1-201ENST00000422522 250 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 SDAD1P3-201ENST00000427380 333 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 NDUFB4P6-201ENST00000436819 366 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 SUMO1P3-201ENST00000439961 304 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 U8.22-201ENST00000459141 133 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 AP002884.2-201ENST00000471647 395 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 AC098869.1-201ENST00000481627 292 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 RN7SKP132-201ENST00000516001 208 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 RNU6-1183P-201ENST00000517054 60 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 AC136932.1-201ENST00000574771 208 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 RPL23AP78-201ENST00000599928 470 ntBASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SLC44A3Q8N4M1 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 AL672296.1-201ENST00000427780 2158 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 Y_RNA.20-201ENST00000362479 113 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 RNU6-212P-201ENST00000362642 104 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 RNU6-942P-201ENST00000363002 107 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 snoU2_19.2-201ENST00000363024 80 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 RNU6-778P-201ENST00000363269 103 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 Y_RNA.358-201ENST00000365491 99 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 Y_RNA.478-201ENST00000384358 107 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 RNY3P4-201ENST00000384428 101 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 RNU6-140P-201ENST00000384566 108 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 MIR493-201ENST00000385254 89 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 SNORD115-46-201ENST00000390982 71 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 AL139095.1-201ENST00000404326 391 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 RNU2-71P-201ENST00000411395 189 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 RPL23AP82-202ENST00000427528 469 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 Z82188.1-201ENST00000436709 154 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 RPS27P29-201ENST00000463110 252 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 CENPBD1P1-201ENST00000464061 469 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 RPL30P5-201ENST00000494923 336 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 Y_RNA.673-201ENST00000516306 88 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 SNORA43.2-201ENST00000516652 128 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 RNU6-111P-201ENST00000517179 105 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 AC099778.2-201ENST00000610904 211 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 AF117829.1-206ENST00000621883 3802 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 AL136360.1-201ENST00000503377 1900 ntBASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SLC44A3Q8N4M1 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 SNORA20.1-201ENST00000364790 130 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 RNU6-805P-201ENST00000365643 106 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 RNU6-209P-201ENST00000384118 107 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 Y_RNA.539-201ENST00000384635 107 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 MIR215-201ENST00000384858 110 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 SNORD67-201ENST00000390833 111 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 RNU6-1197P-201ENST00000391183 107 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 U3.37-201ENST00000408528 213 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 HMGN2P20-201ENST00000437531 273 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 CST9LP2-201ENST00000437612 320 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 AC098831.1-201ENST00000440661 216 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 AL513124.1-201ENST00000450410 614 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 AC108938.1-201ENST00000451204 136 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 MTATP6P7-201ENST00000453315 681 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 CASP1P1-201ENST00000526345 212 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 AC010928.2-201ENST00000588017 287 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 AC024153.1-201ENST00000603103 365 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 FTX_3.1-201ENST00000610451 147 ntBASIC3.17□□□□□ -1.9
SLC44A3Q8N4M1 SCARNA4-201ENST00000629045 128 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 210 ms