Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.75□□□□□ -2.13
SKA3Q8IX90 EDDM3CP-201ENST00000415977 425 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
SKA3Q8IX90 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.75□□□□□ -2.13
SKA3Q8IX90 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.75□□□□□ -2.13
SKA3Q8IX90 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
SKA3Q8IX90 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.75□□□□□ -2.13
SKA3Q8IX90 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.75□□□□□ -2.13
SKA3Q8IX90 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.75□□□□□ -2.13
SKA3Q8IX90 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.75□□□□□ -2.13
SKA3Q8IX90 HMGB3P17-201ENST00000504195 649 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 AC034114.1-201ENST00000520293 285 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.75□□□□□ -2.13
SKA3Q8IX90 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.75□□□□□ -2.13
SKA3Q8IX90 AP005597.4-201ENST00000526762 229 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 AC118273.2-201ENST00000532092 465 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 AC007229.1-201ENST00000590455 412 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 AL162413.1-201ENST00000603198 110 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 AL034555.1-201ENST00000604816 211 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 ELOCP5-201ENST00000604924 333 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 AL357078.3-201ENST00000607528 618 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 AL121757.2-201ENST00000611223 313 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 AC022202.1-201ENST00000613515 211 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
SKA3Q8IX90 OR4G1P-203ENST00000641984 1631 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.74□□□□□ -2.13
SKA3Q8IX90 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.74□□□□□ -2.13
SKA3Q8IX90 RNU6-1141P-201ENST00000364520 107 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 SNORD32A-201ENST00000364805 84 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 SNORD116-4-201ENST00000384733 96 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 AL590556.1-201ENST00000423231 483 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.74□□□□□ -2.13
SKA3Q8IX90 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.74□□□□□ -2.13
SKA3Q8IX90 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.74□□□□□ -2.13
SKA3Q8IX90 RPL38P4-201ENST00000502376 214 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 AC091885.1-201ENST00000506658 268 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 RPL39P5-202ENST00000512505 151 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 RNU6-1069P-201ENST00000516612 133 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 RNU6-965P-201ENST00000516721 96 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 RNU6-667P-201ENST00000517186 102 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 SNORA31.25-201ENST00000517242 134 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 HSPE1P18-201ENST00000517602 280 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 AC104576.1-201ENST00000524225 88 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 AC016957.1-201ENST00000534895 309 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 HSPE1P4-201ENST00000550617 308 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.74□□□□□ -2.13
SKA3Q8IX90 SNRPGP19-201ENST00000603826 189 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 AC064807.4-201ENST00000607201 407 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 AF250324.2-201ENST00000608299 610 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 AC068944.2-201ENST00000610373 403 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 SNORD98-201ENST00000636377 67 ntBASIC1.74□□□□□ -2.13
SKA3Q8IX90 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
SKA3Q8IX90 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
SKA3Q8IX90 Y_RNA.167-201ENST00000363735 109 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 RNU6-1090P-201ENST00000364065 94 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 RNU6-522P-201ENST00000364497 107 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 RNU6-234P-201ENST00000365229 104 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 RNU6-546P-201ENST00000383991 107 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 AL079342.1-201ENST00000401460 267 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 AL590002.1-201ENST00000406554 418 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 RNU6-908P-201ENST00000410160 94 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 Y_RNA.597-201ENST00000410463 100 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 ARL5AP1-201ENST00000418991 388 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 USP9YP18-201ENST00000425912 695 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 AC244670.1-201ENST00000436879 112 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.73□□□□□ -2.13
SKA3Q8IX90 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.73□□□□□ -2.13
SKA3Q8IX90 SNORD60.2-201ENST00000516883 86 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 AC233702.2-202ENST00000562547 291 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 EIF1P4-201ENST00000572664 335 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.73□□□□□ -2.13
SKA3Q8IX90 MIR5692C1-201ENST00000585309 91 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 AC010525.2-201ENST00000590920 195 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 BNIP3P25-201ENST00000596023 559 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 AL031274.2-201ENST00000599419 203 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 AC004492.1-201ENST00000607036 742 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 AL627230.6-201ENST00000611129 280 ntBASIC1.73□□□□□ -2.13
SKA3Q8IX90 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.73□□□□□ -2.13
SKA3Q8IX90 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
SKA3Q8IX90 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SKA3Q8IX90 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 RNU6-451P-201ENST00000362921 107 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 RNU6-1106P-201ENST00000390845 107 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 RNU4-26P-201ENST00000410270 107 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 ERLEC1P1-201ENST00000433806 578 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 MTCO2P3-201ENST00000442543 421 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 PMCHL2-203ENST00000457791 237 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.72□□□□□ -2.13
SKA3Q8IX90 AC008628.2-201ENST00000502605 298 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 HMGB1P35-201ENST00000503360 598 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 AC091874.1-201ENST00000511402 339 ntBASIC1.72□□□□□ -2.13
SKA3Q8IX90 RNU6-720P-201ENST00000516363 108 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 231.4 ms