Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 HMGN2P10-201ENST00000448085 265 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 MTND5P22-201ENST00000458380 195 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 AC116655.1-201ENST00000508324 901 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.24□□□□□ -1.89
VPS53Q5VIR6 RNA5SP356-201ENST00000515972 94 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 RNU6-120P-201ENST00000516077 103 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 SNORA43.2-201ENST00000516652 128 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 RNU6-612P-201ENST00000516909 102 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 SNORD19.2-201ENST00000516978 73 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 Y_RNA.720-201ENST00000517166 92 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 AC026241.1-201ENST00000517873 2142 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 AP000889.1-201ENST00000530968 660 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 GNAI2P1-201ENST00000541815 315 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.24□□□□□ -1.89
VPS53Q5VIR6 AC021739.1-201ENST00000559631 174 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 MIR4680-201ENST00000580906 66 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 AC005014.2-201ENST00000607795 599 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 AC006157.1-201ENST00000611750 366 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 AC007485.1-201ENST00000616755 206 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS53Q5VIR6 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
VPS53Q5VIR6 AC010889.1-201ENST00000566193 2666 ntBASIC3.24□□□□□ -1.89
VPS53Q5VIR6 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS53Q5VIR6 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
VPS53Q5VIR6 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
VPS53Q5VIR6 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
VPS53Q5VIR6 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 MTND4P1-201ENST00000457501 1466 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 RNU6-336P-201ENST00000364891 107 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 Y_RNA.577-201ENST00000384794 101 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 MIR521-1-201ENST00000384902 87 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 MIR887-201ENST00000401258 79 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 OSTCP8-201ENST00000445117 448 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS53Q5VIR6 RNU6-475P-201ENST00000516073 104 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 RNU6-56P-201ENST00000516986 93 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 CBX3P8-201ENST00000532412 525 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 AC010186.2-204ENST00000537668 439 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.23□□□□□ -1.89
VPS53Q5VIR6 MIR5696-201ENST00000578474 85 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 ELOCP29-201ENST00000588193 334 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 SCARNA15.3-201ENST00000626315 122 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 SCARNA4.1-201ENST00000628597 123 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS53Q5VIR6 CDC27P3-201ENST00000635418 1910 ntBASIC3.23□□□□□ -1.89
VPS53Q5VIR6 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.22□□□□□ -1.89
VPS53Q5VIR6 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS53Q5VIR6 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
VPS53Q5VIR6 RNU6-942P-201ENST00000363002 107 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 RNU6-105P-201ENST00000363909 104 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 RNU6-898P-201ENST00000365627 104 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 Y_RNA.459-201ENST00000384251 102 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 MIR634-201ENST00000385208 97 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 RNU6-985P-201ENST00000410182 104 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS53Q5VIR6 AC113618.1-201ENST00000416747 285 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS53Q5VIR6 AC104332.2-201ENST00000429959 156 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 MTND3P2-201ENST00000438452 342 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 RPL39P40-201ENST00000445481 146 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS53Q5VIR6 RPS29P27-201ENST00000463711 170 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 FO393415.2-201ENST00000480085 343 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 RNU6-1137P-201ENST00000517073 99 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS53Q5VIR6 MIR4319-201ENST00000577285 85 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS53Q5VIR6 AC008121.3-201ENST00000618726 433 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 MTND5P16-201ENST00000460269 1703 ntBASIC3.22□□□□□ -1.89
VPS53Q5VIR6 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.21□□□□□ -1.89
VPS53Q5VIR6 ZNF299P-201ENST00000406845 1804 ntBASIC3.21□□□□□ -1.89
VPS53Q5VIR6 MTND5P9-201ENST00000503854 1755 ntBASIC3.21□□□□□ -1.9
VPS53Q5VIR6 RNU6-227P-201ENST00000362865 103 ntBASIC3.21□□□□□ -1.9
VPS53Q5VIR6 RNY1P16-201ENST00000363063 111 ntBASIC3.21□□□□□ -1.9
VPS53Q5VIR6 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
VPS53Q5VIR6 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS53Q5VIR6 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS53Q5VIR6 NUP35P1-201ENST00000422734 947 ntBASIC3.21□□□□□ -1.9
VPS53Q5VIR6 AL160004.2-201ENST00000432935 350 ntBASIC3.21□□□□□ -1.9
VPS53Q5VIR6 AC124916.1-201ENST00000444020 547 ntBASIC3.21□□□□□ -1.9
VPS53Q5VIR6 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS53Q5VIR6 SNORD109B-201ENST00000458961 67 ntBASIC3.21□□□□□ -1.9
VPS53Q5VIR6 SNORD109A-201ENST00000459128 67 ntBASIC3.21□□□□□ -1.9
VPS53Q5VIR6 AC015911.1-201ENST00000495111 156 ntBASIC3.21□□□□□ -1.9
VPS53Q5VIR6 SCARNA11.3-201ENST00000517276 130 ntBASIC3.21□□□□□ -1.9
VPS53Q5VIR6 AC006199.1-201ENST00000548728 219 ntBASIC3.21□□□□□ -1.9
VPS53Q5VIR6 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS53Q5VIR6 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS53Q5VIR6 AC062016.1-201ENST00000355719 319 ntBASIC3.2□□□□□ -1.9
VPS53Q5VIR6 SNORA68.1-201ENST00000364537 132 ntBASIC3.2□□□□□ -1.9
VPS53Q5VIR6 RNU1-100P-201ENST00000365255 165 ntBASIC3.2□□□□□ -1.9
VPS53Q5VIR6 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS53Q5VIR6 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS53Q5VIR6 AL353997.1-201ENST00000432936 108 ntBASIC3.2□□□□□ -1.9
VPS53Q5VIR6 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS53Q5VIR6 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS53Q5VIR6 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms