Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC103988.1-201ENST00000566382 2177 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 AC058791.1-201ENST00000608412 3198 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.42□□□□□ -1.86
USP39Q53GS9 Y_RNA.123-201ENST00000363338 102 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 RNU6-290P-201ENST00000365212 101 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 RNY4P28-201ENST00000365281 93 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 RNU6-47P-201ENST00000383866 107 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 SNORA40C-201ENST00000391285 128 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 Y_RNA.626-201ENST00000411288 95 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.42□□□□□ -1.86
USP39Q53GS9 AL358453.1-201ENST00000422522 250 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 TMSB4XP3-201ENST00000445144 114 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.42□□□□□ -1.86
USP39Q53GS9 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.42□□□□□ -1.86
USP39Q53GS9 RNU7-175P-201ENST00000515915 61 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 SNORA31.8-201ENST00000516327 108 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 Y_RNA.706-201ENST00000516933 99 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 AC022559.1-201ENST00000520905 205 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.42□□□□□ -1.86
USP39Q53GS9 MRPS36P4-201ENST00000534436 298 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 AC026333.2-201ENST00000542164 106 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.42□□□□□ -1.86
USP39Q53GS9 TGIF1P1-201ENST00000558095 802 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 AC010928.2-201ENST00000588017 287 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 AL451007.1-201ENST00000595491 289 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 AC099778.2-201ENST00000610904 211 ntBASIC3.42□□□□□ -1.86
USP39Q53GS9 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.42□□□□□ -1.86
USP39Q53GS9 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
USP39Q53GS9 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
USP39Q53GS9 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
USP39Q53GS9 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.41□□□□□ -1.86
USP39Q53GS9 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP39Q53GS9 RNU6-336P-201ENST00000364891 107 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 SNORD63-201ENST00000384262 68 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 RNU6-166P-201ENST00000384371 107 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
USP39Q53GS9 RNU1-101P-201ENST00000391171 127 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 RPL21P40-201ENST00000428586 483 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.41□□□□□ -1.86
USP39Q53GS9 RNA5SP341-201ENST00000516261 117 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.41□□□□□ -1.86
USP39Q53GS9 EIF4BP1-201ENST00000554881 351 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.41□□□□□ -1.86
USP39Q53GS9 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.41□□□□□ -1.86
USP39Q53GS9 AC090617.3-201ENST00000573670 475 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 AC011921.3-201ENST00000605540 361 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 RMST_8.1-201ENST00000610287 165 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 AL590240.4-201ENST00000616908 390 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 AC002076.2-201ENST00000617362 122 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
USP39Q53GS9 AC090740.1-201ENST00000623193 2262 ntBASIC3.41□□□□□ -1.86
USP39Q53GS9 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP39Q53GS9 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.41□□□□□ -1.86
USP39Q53GS9 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
USP39Q53GS9 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
USP39Q53GS9 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
USP39Q53GS9 RNU6-222P-201ENST00000362438 107 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 SNORD78.2-201ENST00000391076 69 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.4□□□□□ -1.87
USP39Q53GS9 TRIAP1P1-201ENST00000427062 225 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 AL591043.1-201ENST00000432461 424 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 Z75741.1-201ENST00000446793 314 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 TOMM22P6-201ENST00000465035 409 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 RPS20P22-201ENST00000473700 357 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 RPS26P21-201ENST00000475397 348 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 AC139453.3-201ENST00000493276 369 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 MLLT10P2-201ENST00000506434 249 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 SEPT14P8-201ENST00000508026 178 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 RPL23AP94-201ENST00000512518 302 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 SCARNA15.2-201ENST00000516409 127 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.4□□□□□ -1.87
USP39Q53GS9 FAM60BP-201ENST00000578364 658 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.4□□□□□ -1.87
USP39Q53GS9 Z83818.1-201ENST00000603584 150 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 MZT1P2-201ENST00000604387 248 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.4□□□□□ -1.87
USP39Q53GS9 AC006111.3-201ENST00000622137 383 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 U4.7-201ENST00000638126 106 ntBASIC3.4□□□□□ -1.87
USP39Q53GS9 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
USP39Q53GS9 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP39Q53GS9 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP39Q53GS9 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
USP39Q53GS9 Y_RNA.44-201ENST00000362676 108 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 RNU4-90P-201ENST00000362773 141 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 Y_RNA.286-201ENST00000364813 102 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.39□□□□□ -1.87
USP39Q53GS9 RNY1P5-201ENST00000383890 115 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 Y_RNA.504-201ENST00000384481 104 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 Y_RNA.510-201ENST00000384511 114 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 RN7SKP51-201ENST00000410781 304 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 RNU6-651P-201ENST00000411040 105 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.39□□□□□ -1.87
USP39Q53GS9 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.39□□□□□ -1.87
USP39Q53GS9 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.39□□□□□ -1.87
USP39Q53GS9 COX6CP14-201ENST00000469580 174 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 UBE2DNL-203ENST00000474922 222 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 SNORD116-28-201ENST00000516123 91 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 NDUFB9P3-201ENST00000521269 501 ntBASIC3.39□□□□□ -1.87
USP39Q53GS9 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms