Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
SLC44A4Q53GD3 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 Y_RNA.188-201ENST00000363952 111 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 U8.8-201ENST00000365399 135 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 SNORA63.7-201ENST00000365579 123 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 RNU6-1109P-201ENST00000391187 107 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 SAR1AP2-201ENST00000392696 594 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 RNA5SP229-201ENST00000410809 99 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 NUP35P1-201ENST00000422734 947 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 AC099799.1-201ENST00000439809 192 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 RPL21P2-201ENST00000440049 481 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 DAP3P1-201ENST00000441522 278 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 RPS29P27-201ENST00000463711 170 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 AC010655.3-201ENST00000478818 450 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 AP001025.1-201ENST00000486139 332 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 RPL17P19-201ENST00000489069 552 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 AC114801.2-201ENST00000503825 781 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 MRPS35P2-201ENST00000508242 191 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 AC091826.1-201ENST00000514065 313 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 RNA5SP367-201ENST00000516557 118 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 RN7SKP272-201ENST00000516988 232 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 RNU6-1271P-201ENST00000517049 105 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 MIR4273-201ENST00000582824 84 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 AL133393.1-201ENST00000603277 287 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.2□□□□□ -1.9
SLC44A4Q53GD3 AC093831.2-201ENST00000624393 3427 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 Y_RNA.39-201ENST00000362620 98 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 Y_RNA.424-201ENST00000384063 103 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 RNU6-1156P-201ENST00000410365 100 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 SNRPGP7-201ENST00000469016 106 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 RNU5F-8P-201ENST00000515941 111 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 SNORD19.2-201ENST00000516978 73 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 Y_RNA.721-201ENST00000517207 102 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 RNU6-794P-201ENST00000517261 64 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 MIR3945-201ENST00000581853 98 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 AC019159.1-201ENST00000605094 187 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 PRR13P7-201ENST00000605538 430 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 AC013412.1-201ENST00000610687 192 ntBASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SLC44A4Q53GD3 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 MIR22-201ENST00000362190 85 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 RNU1-105P-201ENST00000363470 161 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 RNU6-799P-201ENST00000363567 107 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 RNU6-843P-201ENST00000384454 104 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 MIR147B-201ENST00000390185 80 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 RNA5SP354-201ENST00000391247 136 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 Y_RNA.618-201ENST00000410949 107 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 RPL21P40-201ENST00000428586 483 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 AC007969.2-201ENST00000441891 191 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 AL031659.1-201ENST00000447075 539 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 AC012308.1-201ENST00000451232 178 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 OR2AQ1P-201ENST00000451972 200 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 PCNPP5-201ENST00000452246 481 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 AC112492.4-201ENST00000456549 352 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 AC133134.1-201ENST00000466800 359 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 AC107626.1-201ENST00000471084 183 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 AC091874.1-201ENST00000511402 339 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 ACA59.1-201ENST00000515966 143 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 MYL12BP1-201ENST00000569826 507 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 U2.1-201ENST00000618978 145 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 AC007792.1-201ENST00000623023 402 ntBASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.18□□□□□ -1.9
SLC44A4Q53GD3 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 RNY1P16-201ENST00000363063 111 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 Y_RNA.106-201ENST00000363189 100 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 Y_RNA.210-201ENST00000364161 110 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 RNU6-596P-201ENST00000365395 98 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 RNU6-784P-201ENST00000384330 106 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 MIR544A-201ENST00000384855 91 ntBASIC3.17□□□□□ -1.9
SLC44A4Q53GD3 MT-TG-201ENST00000387429 68 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 140.5 ms