Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNA5SP57-201ENST00000459463 123 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 UBL5P3-201ENST00000475112 231 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AC015911.1-201ENST00000495111 156 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AC010486.3-201ENST00000511602 785 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AC069113.1-201ENST00000517763 267 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AC104581.2-201ENST00000572227 430 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 MIR3941-201ENST00000582572 103 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AC110760.3-201ENST00000598794 467 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AP000654.2-201ENST00000605633 586 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AL022345.1-201ENST00000607292 135 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 U2.17-201ENST00000611454 95 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AC084768.2-201ENST00000622736 221 ntBASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
CCDC40Q4G0X9 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 RNU6-996P-201ENST00000365438 107 ntBASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 RN7SKP61-201ENST00000410642 295 ntBASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 RPS20P15-201ENST00000412792 311 ntBASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 AC010095.1-201ENST00000443543 144 ntBASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 AC087884.1-201ENST00000469738 328 ntBASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 GNAI2P1-201ENST00000541815 315 ntBASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 HSPE1P4-201ENST00000550617 308 ntBASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC40Q4G0X9 Y_RNA.77-201ENST00000362962 107 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 RNA5SP501-201ENST00000410990 112 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 AL353193.1-201ENST00000421444 268 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 EIF4EP2-201ENST00000422816 654 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 AC078809.1-201ENST00000427601 140 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 AC002486.1-201ENST00000435098 391 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 HSPE1P21-201ENST00000438283 308 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 RPL7P54-201ENST00000438336 674 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 RPS3AP17-201ENST00000472594 777 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 AC104564.1-201ENST00000493028 407 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 YWHAEP4-201ENST00000505390 198 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 RN7SKP298-201ENST00000515950 94 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 MIR4713-201ENST00000582691 75 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 RNU6-85P-201ENST00000605989 107 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 AC025754.2-201ENST00000606491 432 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 AL354950.2-201ENST00000617939 290 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 U1.36-201ENST00000620684 176 ntBASIC1.87□□□□□ -2.11
CCDC40Q4G0X9 RNA5SP363-201ENST00000365072 115 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 Y_RNA.381-201ENST00000365666 102 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 RNU6-1158P-201ENST00000391167 107 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 MTCYBP2-201ENST00000407745 171 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 POLHP1-201ENST00000411806 470 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 UBE2V1P4-201ENST00000425374 344 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 RPL23AP95-201ENST00000426806 265 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 snoU13.26-201ENST00000459452 105 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 AL163973.1-201ENST00000484753 577 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 AC010424.1-201ENST00000506336 297 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 CCDC34P1-201ENST00000507441 517 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 AC090115.3-201ENST00000553218 849 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 DEFB122-202ENST00000569013 197 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 AC004223.2-201ENST00000590309 544 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 CYP2C61P-201ENST00000604072 290 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 AL356157.2-201ENST00000605122 111 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 AC007684.1-201ENST00000609671 477 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 uc_338.34-201ENST00000617467 174 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 AC009509.4-201ENST00000619202 509 ntBASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC40Q4G0X9 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 RNU6-26P-201ENST00000383985 107 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 SNORA26.3-201ENST00000391119 136 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 AL357139.1-201ENST00000407792 426 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 MIR1289-2-201ENST00000408360 111 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 MTATP6P17-201ENST00000431030 672 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 VN1R108P-201ENST00000431580 830 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 AL133396.1-201ENST00000432048 687 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 AL121890.1-201ENST00000435457 205 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 HMGN2P18-201ENST00000450680 270 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 RNU6-333P-201ENST00000459117 107 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 AC132942.1-201ENST00000486753 483 ntBASIC1.85□□□□□ -2.11
CCDC40Q4G0X9 HMGB1P29-201ENST00000505659 499 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms