Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SNORA72.2-201ENST00000365028 127 ntBASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 Y_RNA.465-201ENST00000384293 102 ntBASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 MTCO2P21-201ENST00000419780 677 ntBASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 AC007969.2-201ENST00000441891 191 ntBASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 HAR1A.1-201ENST00000459583 118 ntBASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 AC119751.4-201ENST00000507498 357 ntBASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 SNORA3.4-201ENST00000515969 96 ntBASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 MIR5692A1-201ENST00000580523 69 ntBASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 DPPA3P3-201ENST00000603842 430 ntBASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 BNIP3P31-201ENST00000604515 566 ntBASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 AC100821.1-201ENST00000523153 2479 ntBASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 ZNF736P9Y-201ENST00000439586 1345 ntBASIC0.77□□□□□ -2.29
CCDC88AQ3V6T2 RNU4-56P-201ENST00000364700 142 ntBASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 RNU1-36P-201ENST00000365130 165 ntBASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 RNU6-413P-201ENST00000384115 107 ntBASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 RPS3AP36-201ENST00000398190 775 ntBASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 RPS20P2-201ENST00000402520 389 ntBASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AL133475.1-201ENST00000404414 305 ntBASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 snoU13.27-201ENST00000459278 104 ntBASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AC130509.1-201ENST00000464158 433 ntBASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 Y_RNA.687-201ENST00000516558 91 ntBASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AC004812.1-201ENST00000540773 146 ntBASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AC105129.3-201ENST00000605455 485 ntBASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC88AQ3V6T2 RNU5E-10P-201ENST00000363506 118 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 RNU6-43P-201ENST00000384302 107 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 PIGPP2-201ENST00000411569 458 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 TXNL1P1-201ENST00000429528 554 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 TOMM22P2-201ENST00000430735 237 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 HMGN1P13-201ENST00000505795 138 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 AL356157.2-201ENST00000605122 111 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 RNU4-1-201ENST00000363925 141 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 SNORA48.1-201ENST00000390879 135 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 snoU109.2-201ENST00000459316 135 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 MTND2P31-201ENST00000512602 616 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 RNU7-51P-201ENST00000516560 62 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 MIR5094-201ENST00000578766 85 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 AL138960.2-201ENST00000625145 535 ntBASIC0.75□□□□□ -2.29
CCDC88AQ3V6T2 RNU6-1141P-201ENST00000364520 107 ntBASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 VTRNA1-3-201ENST00000365645 89 ntBASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 SNORA25-201ENST00000384384 134 ntBASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 MIR544A-201ENST00000384855 91 ntBASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 RNU6-1245P-201ENST00000411130 106 ntBASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 AL161935.2-201ENST00000414627 60 ntBASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 RPL21P111-201ENST00000418453 477 ntBASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 snoU13.9-201ENST00000458927 103 ntBASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 RNA5SP337-201ENST00000517007 109 ntBASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 AC011979.2-201ENST00000527568 352 ntBASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 7SK.7-201ENST00000603504 247 ntBASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 AL596327.1-201ENST00000603629 213 ntBASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.74□□□□□ -2.29
CCDC88AQ3V6T2 SNORA63D-201ENST00000364359 132 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 RNU6-1187P-201ENST00000364771 110 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 Y_RNA.480-201ENST00000384364 102 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 MIR558-201ENST00000384920 94 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AL590556.1-201ENST00000423231 483 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 RPL31P35-201ENST00000431058 377 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AC027119.1-201ENST00000440877 241 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AL139824.2-201ENST00000458731 1095 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AC099513.1-201ENST00000490423 301 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AC008751.2-201ENST00000597885 980 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AL158042.1-201ENST00000605338 460 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 AC067863.3-201ENST00000624172 122 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 SNORA29-201ENST00000384183 140 ntBASIC0.73□□□□□ -2.29
CCDC88AQ3V6T2 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms