Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC074085.1-201ENST00000413598 418 ntBASIC2.59□□□□□ -1.99
USP41Q3LFD5 BX276092.3-201ENST00000424182 230 ntBASIC2.59□□□□□ -1.99
USP41Q3LFD5 AL356320.1-201ENST00000429616 163 ntBASIC2.59□□□□□ -1.99
USP41Q3LFD5 AC010095.1-201ENST00000443543 144 ntBASIC2.59□□□□□ -1.99
USP41Q3LFD5 AL031659.1-201ENST00000447075 539 ntBASIC2.59□□□□□ -1.99
USP41Q3LFD5 AC107399.1-201ENST00000451226 265 ntBASIC2.59□□□□□ -1.99
USP41Q3LFD5 RNU6-875P-201ENST00000516488 106 ntBASIC2.59□□□□□ -1.99
USP41Q3LFD5 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
USP41Q3LFD5 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.59□□□□□ -1.99
USP41Q3LFD5 AL049779.4-201ENST00000604500 156 ntBASIC2.59□□□□□ -1.99
USP41Q3LFD5 AP001836.1-201ENST00000604675 523 ntBASIC2.59□□□□□ -1.99
USP41Q3LFD5 MIR3976-201ENST00000606807 139 ntBASIC2.59□□□□□ -1.99
USP41Q3LFD5 Y_RNA.804-201ENST00000615262 101 ntBASIC2.59□□□□□ -1.99
USP41Q3LFD5 AC063943.3-201ENST00000615562 356 ntBASIC2.59□□□□□ -1.99
USP41Q3LFD5 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
USP41Q3LFD5 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
USP41Q3LFD5 OR56A5-201ENST00000340110 738 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 Y_RNA.70-201ENST00000362886 110 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 SNORD114-30-201ENST00000364448 72 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 RNU6-43P-201ENST00000384302 107 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 RNU6-1222P-201ENST00000384615 107 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 MIR186-201ENST00000384988 86 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 MIR517A-201ENST00000385001 87 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.58□□□□□ -2
USP41Q3LFD5 RNU6-1009P-201ENST00000390996 107 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
USP41Q3LFD5 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 MIR548K-201ENST00000408406 116 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 RNU2-23P-201ENST00000410545 195 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 RPL30P4-201ENST00000429309 333 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 RPS3AP52-201ENST00000435639 297 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 AC140059.1-201ENST00000489238 361 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 AC023141.11-201ENST00000508864 202 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 SCARNA3-201ENST00000517097 143 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 RNU1-54P-201ENST00000517181 120 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 AP005902.1-201ENST00000521358 186 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.58□□□□□ -2
USP41Q3LFD5 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.58□□□□□ -2
USP41Q3LFD5 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.58□□□□□ -2
USP41Q3LFD5 AC090616.3-201ENST00000582184 217 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 MIR3117-201ENST00000584034 78 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 AC124303.1-201ENST00000605703 360 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 AC103810.6-201ENST00000606708 136 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 AC009994.1-201ENST00000606889 253 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 AL137847.3-201ENST00000611521 109 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 AL161423.1-201ENST00000613700 262 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.58□□□□□ -2
USP41Q3LFD5 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.58□□□□□ -2
USP41Q3LFD5 AL008636.1-201ENST00000625038 1018 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 MIR1291-201ENST00000627649 87 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 MIR7157-201ENST00000635801 60 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
USP41Q3LFD5 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
USP41Q3LFD5 AC002543.1-201ENST00000299783 1954 ntBASIC2.58□□□□□ -2
USP41Q3LFD5 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.57□□□□□ -2
USP41Q3LFD5 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
USP41Q3LFD5 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.57□□□□□ -2
USP41Q3LFD5 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.57□□□□□ -2
USP41Q3LFD5 RNU6-227P-201ENST00000362865 103 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 RNU1-57P-201ENST00000384491 166 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 BTF3L4P2-201ENST00000392798 346 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 AC007064.1-201ENST00000412238 351 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 MICF-203ENST00000432679 129 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 AC093019.1-201ENST00000443135 252 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 AL353705.4-201ENST00000449661 238 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.57□□□□□ -2
USP41Q3LFD5 MTND4P17-201ENST00000470444 350 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 RPS29P21-201ENST00000496272 170 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.57□□□□□ -2
USP41Q3LFD5 AC114801.2-201ENST00000503825 781 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 AC026436.1-201ENST00000510537 270 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.57□□□□□ -2
USP41Q3LFD5 RPPH1-2P-201ENST00000516688 293 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 AC105029.1-201ENST00000520250 669 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 CPDP1-201ENST00000579660 283 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 AC046143.2-201ENST00000609789 160 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 AL133215.3-201ENST00000609801 448 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 FO624990.1-201ENST00000636373 85 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 AC016717.2-201ENST00000609089 5141 ntBASIC2.57□□□□□ -2
USP41Q3LFD5 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
USP41Q3LFD5 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.56□□□□□ -2
USP41Q3LFD5 AC009541.1-201ENST00000438279 2662 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 Y_RNA.40-201ENST00000362645 93 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
USP41Q3LFD5 RN7SKP223-201ENST00000410582 62 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 AP000275.1-201ENST00000411943 390 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 RPL37P10-201ENST00000412884 288 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 EIF4EP4-201ENST00000424916 578 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.56□□□□□ -2
USP41Q3LFD5 AL445687.1-201ENST00000439946 251 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.56□□□□□ -2
USP41Q3LFD5 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.56□□□□□ -2
USP41Q3LFD5 AC091874.1-201ENST00000511402 339 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 PTP4A1P4-201ENST00000512479 322 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.56□□□□□ -2
USP41Q3LFD5 RNU2-53P-201ENST00000516257 147 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 RNA5SP281-201ENST00000516504 135 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 SNORA31.11-201ENST00000516528 139 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 Y_RNA.691-201ENST00000516611 103 ntBASIC2.56□□□□□ -2
USP41Q3LFD5 HSPE1P4-201ENST00000550617 308 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms