Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RNA5SP293-201ENST00000410527 113 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 MRPS18CP6-201ENST00000423587 223 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 AL445687.1-201ENST00000439946 251 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 OR2AQ1P-201ENST00000451972 200 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 AP000705.1-201ENST00000454567 350 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 Y_RNA.631-201ENST00000459607 101 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.7□□□□□ -1.82
SF3A1Q15459 AC091826.1-201ENST00000514065 313 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 SNORD116.3-201ENST00000517176 78 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 RNU6-586P-201ENST00000517265 104 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 AC068657.1-201ENST00000520807 306 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 SNRPGP18-201ENST00000553000 214 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 AC023043.3-201ENST00000593113 385 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.7□□□□□ -1.82
SF3A1Q15459 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.7□□□□□ -1.82
SF3A1Q15459 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.7□□□□□ -1.82
SF3A1Q15459 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 AC134503.1-201ENST00000633048 54 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
SF3A1Q15459 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
SF3A1Q15459 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.7□□□□□ -1.82
SF3A1Q15459 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
SF3A1Q15459 SNORD56.5-201ENST00000364281 72 ntBASIC3.69□□□□□ -1.82
SF3A1Q15459 RNU6-308P-201ENST00000390957 107 ntBASIC3.69□□□□□ -1.82
SF3A1Q15459 SNORA46.1-201ENST00000391069 153 ntBASIC3.69□□□□□ -1.82
SF3A1Q15459 RNU6-1156P-201ENST00000410365 100 ntBASIC3.69□□□□□ -1.82
SF3A1Q15459 Z92545.1-201ENST00000411782 234 ntBASIC3.69□□□□□ -1.82
SF3A1Q15459 AC104332.2-201ENST00000429959 156 ntBASIC3.69□□□□□ -1.82
SF3A1Q15459 AC092427.1-202ENST00000430569 476 ntBASIC3.69□□□□□ -1.82
SF3A1Q15459 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.69□□□□□ -1.82
SF3A1Q15459 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.69□□□□□ -1.82
SF3A1Q15459 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.69□□□□□ -1.82
SF3A1Q15459 AC008121.3-201ENST00000618726 433 ntBASIC3.69□□□□□ -1.82
SF3A1Q15459 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.69□□□□□ -1.82
SF3A1Q15459 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.69□□□□□ -1.82
SF3A1Q15459 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.69□□□□□ -1.82
SF3A1Q15459 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
SF3A1Q15459 MIR148B-201ENST00000362252 99 ntBASIC3.68□□□□□ -1.82
SF3A1Q15459 RNU1-33P-201ENST00000364249 162 ntBASIC3.68□□□□□ -1.82
SF3A1Q15459 RNU6-378P-201ENST00000384324 107 ntBASIC3.68□□□□□ -1.82
SF3A1Q15459 AL138885.1-201ENST00000405921 675 ntBASIC3.68□□□□□ -1.82
SF3A1Q15459 MIR548P-201ENST00000408336 84 ntBASIC3.68□□□□□ -1.82
SF3A1Q15459 RNU2-63P-201ENST00000410792 194 ntBASIC3.68□□□□□ -1.82
SF3A1Q15459 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.68□□□□□ -1.82
SF3A1Q15459 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.68□□□□□ -1.82
SF3A1Q15459 HSPE1P18-201ENST00000517602 280 ntBASIC3.68□□□□□ -1.82
SF3A1Q15459 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.68□□□□□ -1.82
SF3A1Q15459 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.68□□□□□ -1.82
SF3A1Q15459 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.68□□□□□ -1.82
SF3A1Q15459 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.68□□□□□ -1.82
SF3A1Q15459 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.68□□□□□ -1.82
SF3A1Q15459 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.68□□□□□ -1.82
SF3A1Q15459 uc_338.22-201ENST00000622722 187 ntBASIC3.68□□□□□ -1.82
SF3A1Q15459 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
SF3A1Q15459 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.67□□□□□ -1.82
SF3A1Q15459 Y_RNA.128-201ENST00000363391 112 ntBASIC3.67□□□□□ -1.82
SF3A1Q15459 Y_RNA.319-201ENST00000365138 92 ntBASIC3.67□□□□□ -1.82
SF3A1Q15459 RNU6-1274P-201ENST00000384557 107 ntBASIC3.67□□□□□ -1.82
SF3A1Q15459 MIR190B-201ENST00000401119 79 ntBASIC3.67□□□□□ -1.82
SF3A1Q15459 NDUFB4P4-201ENST00000404822 243 ntBASIC3.67□□□□□ -1.82
SF3A1Q15459 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.67□□□□□ -1.82
SF3A1Q15459 CYP2C59P-201ENST00000457790 269 ntBASIC3.67□□□□□ -1.82
SF3A1Q15459 RPL21P10-201ENST00000463521 490 ntBASIC3.67□□□□□ -1.82
SF3A1Q15459 RNU7-4P-201ENST00000516961 62 ntBASIC3.67□□□□□ -1.82
SF3A1Q15459 MIR2682-201ENST00000580305 110 ntBASIC3.67□□□□□ -1.82
SF3A1Q15459 AL356055.1-201ENST00000602528 446 ntBASIC3.67□□□□□ -1.82
SF3A1Q15459 AL138963.2-201ENST00000605137 226 ntBASIC3.67□□□□□ -1.82
SF3A1Q15459 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.67□□□□□ -1.82
SF3A1Q15459 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
SF3A1Q15459 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.67□□□□□ -1.82
SF3A1Q15459 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SF3A1Q15459 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.66□□□□□ -1.82
SF3A1Q15459 Y_RNA.5-201ENST00000362334 102 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 U3.9-201ENST00000363823 204 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 RNA5SP267-201ENST00000364893 126 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 Y_RNA.395-201ENST00000383945 109 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 RNU6-474P-201ENST00000384243 107 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 RNU6-17P-201ENST00000384245 107 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 RNU6-18P-201ENST00000384527 107 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 MIR487A-201ENST00000385009 80 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 MIR634-201ENST00000385208 97 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 SNORA12-201ENST00000391162 147 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SF3A1Q15459 RNA5SP201-201ENST00000410316 124 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.66□□□□□ -1.82
SF3A1Q15459 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.66□□□□□ -1.82
SF3A1Q15459 RPL21P2-201ENST00000440049 481 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.66□□□□□ -1.82
SF3A1Q15459 BX510359.1-201ENST00000456973 237 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 RNU7-169P-201ENST00000459456 61 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 RNA5SP380-201ENST00000517190 98 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 RN7SKP40-201ENST00000517211 242 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 SNORA31.26-201ENST00000517250 137 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 AC245166.1-201ENST00000521012 253 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.66□□□□□ -1.82
SF3A1Q15459 AC073657.2-201ENST00000605661 303 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 PCGEM1.1-201ENST00000613431 131 ntBASIC3.66□□□□□ -1.82
SF3A1Q15459 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.66□□□□□ -1.82
SF3A1Q15459 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms