Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AP003465.2-201ENST00000602571 373 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC078795.3-201ENST00000602913 472 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC007363.1-201ENST00000604736 620 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL355816.2-201ENST00000610049 647 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC009237.15-201ENST00000610252 501 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL353149.1-201ENST00000610667 244 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC0.07□□□□□ -2.4
COL7A1Q02388 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
COL7A1Q02388 ANKRD26P2-201ENST00000445530 1710 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU6-486P-201ENST00000363116 107 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU6-23P-201ENST00000363283 107 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU6-969P-201ENST00000383900 105 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 Y_RNA.475-201ENST00000384345 101 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU6-1237P-201ENST00000384777 107 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 MIR200A-201ENST00000384875 90 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 MIR506-201ENST00000384998 124 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.06□□□□□ -2.4
COL7A1Q02388 SNORA75.2-201ENST00000391138 150 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 SNORA75.3-201ENST00000391231 150 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU6-1245P-201ENST00000411130 106 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 ELOCP9-201ENST00000418624 239 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 MTND4P25-201ENST00000441039 533 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 DAP3P1-201ENST00000441522 278 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 MTCO2P25-201ENST00000447065 681 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 GAPDHP17-201ENST00000449858 1001 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC011005.2-201ENST00000487324 359 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU5A-4P-201ENST00000516588 111 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 SNORA31.17-201ENST00000516953 127 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 SNORA70.22-201ENST00000517160 124 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 MTND4LP26-201ENST00000518144 282 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.06□□□□□ -2.4
COL7A1Q02388 DEFB131D-201ENST00000526803 184 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AP003392.2-201ENST00000527269 208 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 AC022523.2-201ENST00000561045 150 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC023824.3-201ENST00000569003 562 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC0.06□□□□□ -2.4
COL7A1Q02388 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 VN1R88P-201ENST00000596787 292 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 MTATP6P2-201ENST00000603319 678 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC091805.2-201ENST00000603848 235 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU4-5P-201ENST00000607255 135 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC104073.3-201ENST00000610942 955 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC018926.1-201ENST00000616335 435 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 U1.36-201ENST00000620684 176 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 MIR4315-1-201ENST00000636800 73 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 MIR371B-201ENST00000638082 66 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.06□□□□□ -2.4
COL7A1Q02388 MIR4315-2-201ENST00000640925 73 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 MTND5P32-201ENST00000560711 1802 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
COL7A1Q02388 snoU2-30.2-201ENST00000362805 70 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 SNORD114-16-201ENST00000363044 70 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 Y_RNA.117-201ENST00000363294 101 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 Y_RNA.124-201ENST00000363339 93 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 Y_RNA.234-201ENST00000364409 97 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU6-343P-201ENST00000364709 104 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 SNORA27.3-201ENST00000364937 134 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU6-302P-201ENST00000365249 107 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU6-898P-201ENST00000365627 104 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 SNORA29-201ENST00000384183 140 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU6-622P-201ENST00000384272 103 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 SNORA26.3-201ENST00000391119 136 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 Y_RNA.616-201ENST00000410835 95 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 BTF3P8-201ENST00000414577 526 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 ARL5AP1-201ENST00000418991 388 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 AC006366.1-201ENST00000422002 759 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.06□□□□□ -2.4
COL7A1Q02388 OFD1P7Y-201ENST00000454643 1155 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 MTND2P6-201ENST00000455337 1030 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
COL7A1Q02388 AC114981.1-201ENST00000503897 678 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC093259.1-201ENST00000509755 300 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 SNORA31.2-201ENST00000516019 134 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU6-1098P-201ENST00000516772 96 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU6-1092P-201ENST00000516955 87 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 UTP23-205ENST00000520733 369 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC0.06□□□□□ -2.4
COL7A1Q02388 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 AL356057.1-201ENST00000533798 831 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC0.06□□□□□ -2.4
COL7A1Q02388 AC018659.1-201ENST00000551083 169 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC0.06□□□□□ -2.4
COL7A1Q02388 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC012213.3-201ENST00000577199 777 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC087685.1-201ENST00000587507 141 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC0.06□□□□□ -2.4
COL7A1Q02388 AC012507.3-201ENST00000603556 477 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC010900.2-201ENST00000604508 210 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 PRELID3BP2-201ENST00000605362 201 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 RNU6-94P-201ENST00000607728 107 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms