Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.18□□□□□ -1.9
COL4A3Q01955 AC007336.1-201ENST00000576365 3828 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 AC026523.2-201ENST00000625039 7739 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
COL4A3Q01955 AC008568.2-201ENST00000623862 2313 ntBASIC3.18□□□□□ -1.9
COL4A3Q01955 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL4A3Q01955 RNU6-774P-201ENST00000363238 107 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 Y_RNA.199-201ENST00000364014 102 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 RNU6-662P-201ENST00000384253 104 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 RNU6-72P-201ENST00000384285 79 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
COL4A3Q01955 SNORD78.2-201ENST00000391076 69 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 AC098614.2-201ENST00000426040 255 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 SNRPEP9-201ENST00000436794 238 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 AC009296.1-201ENST00000443146 155 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 RPS26P21-201ENST00000475397 348 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.17□□□□□ -1.9
COL4A3Q01955 SNORA70.19-201ENST00000516717 90 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 TGIF1P1-201ENST00000558095 802 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 LINC00933-203ENST00000559812 219 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.17□□□□□ -1.9
COL4A3Q01955 AC127459.3-201ENST00000624328 466 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL4A3Q01955 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL4A3Q01955 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.17□□□□□ -1.9
COL4A3Q01955 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.17□□□□□ -1.9
COL4A3Q01955 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
COL4A3Q01955 RNU6-78P-201ENST00000362897 107 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 RNU6-105P-201ENST00000363909 104 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 RNU6-17P-201ENST00000384245 107 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 RNU6-378P-201ENST00000384324 107 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 RNU6-18P-201ENST00000384527 107 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 AL138878.1-201ENST00000405131 347 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.17□□□□□ -1.9
COL4A3Q01955 AL590383.1-201ENST00000428602 75 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 NDUFB4P10-201ENST00000452541 359 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 AL109933.2-201ENST00000452651 260 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 TRAV28-201ENST00000557548 323 ntBASIC3.17□□□□□ -1.9
COL4A3Q01955 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL4A3Q01955 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL4A3Q01955 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.17□□□□□ -1.9
COL4A3Q01955 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A3Q01955 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A3Q01955 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.16□□□□□ -1.9
COL4A3Q01955 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.16□□□□□ -1.9
COL4A3Q01955 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A3Q01955 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A3Q01955 RNU6-545P-201ENST00000362681 104 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 RNA5SP502-201ENST00000362694 119 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 RNU4-90P-201ENST00000362773 141 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 SNORD63-201ENST00000384262 68 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 Y_RNA.464-201ENST00000384282 110 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 RNU6-541P-201ENST00000384709 110 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 MIR32-201ENST00000384965 70 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A3Q01955 U3.37-201ENST00000408528 213 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL4A3Q01955 RPS4XP22-201ENST00000480755 780 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 AC107393.1-201ENST00000512403 346 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 RNA5SP445-201ENST00000515889 115 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 RNU6-496P-201ENST00000516145 99 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 MIR5047-201ENST00000579212 100 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 AC024153.1-201ENST00000603103 365 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 RMST_6.1-201ENST00000611980 203 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 uc_338.32-201ENST00000615087 172 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 AC011476.5-201ENST00000615594 130 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.16□□□□□ -1.9
COL4A3Q01955 SCARNA4-202ENST00000625402 129 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.16□□□□□ -1.9
COL4A3Q01955 AC096644.4-201ENST00000563417 2912 ntBASIC3.16□□□□□ -1.9
COL4A3Q01955 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.15□□□□□ -1.9
COL4A3Q01955 Z73965.1-201ENST00000623412 2297 ntBASIC3.15□□□□□ -1.9
COL4A3Q01955 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.15□□□□□ -1.9
COL4A3Q01955 TOMM22P1-201ENST00000418578 312 ntBASIC3.15□□□□□ -1.9
COL4A3Q01955 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.15□□□□□ -1.9
COL4A3Q01955 RPL30P1-201ENST00000488676 339 ntBASIC3.15□□□□□ -1.9
COL4A3Q01955 RPL23AP49-201ENST00000492925 468 ntBASIC3.15□□□□□ -1.9
COL4A3Q01955 SEPT14P8-201ENST00000508026 178 ntBASIC3.15□□□□□ -1.9
COL4A3Q01955 RNU6-703P-201ENST00000516946 107 ntBASIC3.15□□□□□ -1.9
COL4A3Q01955 AC079600.2-201ENST00000550076 130 ntBASIC3.15□□□□□ -1.9
COL4A3Q01955 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.15□□□□□ -1.9
COL4A3Q01955 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.15□□□□□ -1.9
COL4A3Q01955 AC010928.2-201ENST00000588017 287 ntBASIC3.15□□□□□ -1.9
COL4A3Q01955 AC097372.5-201ENST00000623665 376 ntBASIC3.15□□□□□ -1.9
COL4A3Q01955 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL4A3Q01955 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.15□□□□□ -1.91
COL4A3Q01955 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.15□□□□□ -1.91
COL4A3Q01955 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL4A3Q01955 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.15□□□□□ -1.91
COL4A3Q01955 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.15□□□□□ -1.91
COL4A3Q01955 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL4A3Q01955 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.15□□□□□ -1.91
COL4A3Q01955 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
COL4A3Q01955 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.14□□□□□ -1.91
COL4A3Q01955 SNORA53-201ENST00000391141 249 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 RN7SKP220-201ENST00000410611 288 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 BMS1P22-201ENST00000414726 313 ntBASIC3.14□□□□□ -1.91
COL4A3Q01955 AL358453.1-201ENST00000422522 250 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms