Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC099654.7-201ENST00000635788 2127 ntBASIC3.64□□□□□ -1.83
RNF4P78317 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
RNF4P78317 AL109809.4-201ENST00000603520 2185 ntBASIC3.63□□□□□ -1.83
RNF4P78317 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.63□□□□□ -1.83
RNF4P78317 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.63□□□□□ -1.83
RNF4P78317 RNU1-89P-201ENST00000384592 164 ntBASIC3.63□□□□□ -1.83
RNF4P78317 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.63□□□□□ -1.83
RNF4P78317 Y_RNA.597-201ENST00000410463 100 ntBASIC3.63□□□□□ -1.83
RNF4P78317 ELOCP21-201ENST00000412558 336 ntBASIC3.63□□□□□ -1.83
RNF4P78317 AC245291.1-201ENST00000419501 328 ntBASIC3.63□□□□□ -1.83
RNF4P78317 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.63□□□□□ -1.83
RNF4P78317 AL121594.1-201ENST00000475906 575 ntBASIC3.63□□□□□ -1.83
RNF4P78317 RPL31P61-201ENST00000496160 376 ntBASIC3.63□□□□□ -1.83
RNF4P78317 AC074133.1-201ENST00000515696 183 ntBASIC3.63□□□□□ -1.83
RNF4P78317 RNU6-155P-201ENST00000516347 100 ntBASIC3.63□□□□□ -1.83
RNF4P78317 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.63□□□□□ -1.83
RNF4P78317 AP002001.1-203ENST00000534002 267 ntBASIC3.63□□□□□ -1.83
RNF4P78317 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.63□□□□□ -1.83
RNF4P78317 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.63□□□□□ -1.83
RNF4P78317 MIR3923-201ENST00000579521 83 ntBASIC3.63□□□□□ -1.83
RNF4P78317 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.63□□□□□ -1.83
RNF4P78317 AC004467.1-201ENST00000615678 330 ntBASIC3.63□□□□□ -1.83
RNF4P78317 MIR8058-201ENST00000615737 89 ntBASIC3.63□□□□□ -1.83
RNF4P78317 AL354798.1-201ENST00000622505 329 ntBASIC3.63□□□□□ -1.83
RNF4P78317 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
RNF4P78317 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
RNF4P78317 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
RNF4P78317 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
RNF4P78317 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
RNF4P78317 AC010889.1-201ENST00000566193 2666 ntBASIC3.63□□□□□ -1.83
RNF4P78317 ZNF962P-201ENST00000443465 3140 ntBASIC3.63□□□□□ -1.83
RNF4P78317 AL353746.1-201ENST00000566293 6881 ntBASIC3.63□□□□□ -1.83
RNF4P78317 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
RNF4P78317 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
RNF4P78317 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.62□□□□□ -1.83
RNF4P78317 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.62□□□□□ -1.83
RNF4P78317 RNU6-245P-201ENST00000384020 107 ntBASIC3.62□□□□□ -1.83
RNF4P78317 RNA5SP252-201ENST00000391131 119 ntBASIC3.62□□□□□ -1.83
RNF4P78317 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.62□□□□□ -1.83
RNF4P78317 CYCSP48-201ENST00000417124 323 ntBASIC3.62□□□□□ -1.83
RNF4P78317 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.62□□□□□ -1.83
RNF4P78317 RNU7-23P-201ENST00000459465 62 ntBASIC3.62□□□□□ -1.83
RNF4P78317 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.62□□□□□ -1.83
RNF4P78317 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.62□□□□□ -1.83
RNF4P78317 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.62□□□□□ -1.83
RNF4P78317 AC072026.1-201ENST00000605023 201 ntBASIC3.62□□□□□ -1.83
RNF4P78317 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
RNF4P78317 AC092593.1-201ENST00000515413 1815 ntBASIC3.62□□□□□ -1.83
RNF4P78317 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.62□□□□□ -1.83
RNF4P78317 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.62□□□□□ -1.83
RNF4P78317 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
RNF4P78317 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
RNF4P78317 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
RNF4P78317 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.61□□□□□ -1.83
RNF4P78317 Y_RNA.308-201ENST00000365043 101 ntBASIC3.61□□□□□ -1.83
RNF4P78317 SNORD2.1-201ENST00000458762 69 ntBASIC3.61□□□□□ -1.83
RNF4P78317 AP002884.2-201ENST00000471647 395 ntBASIC3.61□□□□□ -1.83
RNF4P78317 RN7SL323P-201ENST00000494712 295 ntBASIC3.61□□□□□ -1.83
RNF4P78317 Y_RNA.703-201ENST00000516846 111 ntBASIC3.61□□□□□ -1.83
RNF4P78317 CYCSP23-201ENST00000519781 313 ntBASIC3.61□□□□□ -1.83
RNF4P78317 CYCSP30-201ENST00000546447 172 ntBASIC3.61□□□□□ -1.83
RNF4P78317 MIR5685-201ENST00000579080 79 ntBASIC3.61□□□□□ -1.83
RNF4P78317 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.61□□□□□ -1.83
RNF4P78317 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.61□□□□□ -1.83
RNF4P78317 DEFB117-201ENST00000602356 141 ntBASIC3.61□□□□□ -1.83
RNF4P78317 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.61□□□□□ -1.83
RNF4P78317 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.61□□□□□ -1.83
RNF4P78317 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.61□□□□□ -1.83
RNF4P78317 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.61□□□□□ -1.83
RNF4P78317 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.6□□□□□ -1.83
RNF4P78317 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
RNF4P78317 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
RNF4P78317 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.6□□□□□ -1.83
RNF4P78317 Y_RNA.415-201ENST00000384012 112 ntBASIC3.6□□□□□ -1.83
RNF4P78317 SNORA18.3-201ENST00000384122 132 ntBASIC3.6□□□□□ -1.83
RNF4P78317 RNU6-125P-201ENST00000384505 107 ntBASIC3.6□□□□□ -1.83
RNF4P78317 SNORA3.3-201ENST00000408712 125 ntBASIC3.6□□□□□ -1.83
RNF4P78317 AC024067.1-201ENST00000426199 223 ntBASIC3.6□□□□□ -1.83
RNF4P78317 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.6□□□□□ -1.83
RNF4P78317 AL392103.1-201ENST00000447000 198 ntBASIC3.6□□□□□ -1.83
RNF4P78317 AL441985.1-201ENST00000457727 251 ntBASIC3.6□□□□□ -1.83
RNF4P78317 AP001324.2-201ENST00000461163 319 ntBASIC3.6□□□□□ -1.83
RNF4P78317 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.6□□□□□ -1.83
RNF4P78317 RNU6-1278P-201ENST00000516130 107 ntBASIC3.6□□□□□ -1.83
RNF4P78317 RNU6-1212P-201ENST00000517023 104 ntBASIC3.6□□□□□ -1.83
RNF4P78317 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.6□□□□□ -1.83
RNF4P78317 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.6□□□□□ -1.83
RNF4P78317 AL356575.1-201ENST00000603008 283 ntBASIC3.6□□□□□ -1.83
RNF4P78317 AC005520.5-201ENST00000613926 164 ntBASIC3.6□□□□□ -1.83
RNF4P78317 AC073349.3-201ENST00000617616 186 ntBASIC3.6□□□□□ -1.83
RNF4P78317 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
RNF4P78317 AC021753.1-201ENST00000635724 168 ntBASIC3.6□□□□□ -1.83
RNF4P78317 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.6□□□□□ -1.83
RNF4P78317 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
RNF4P78317 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
RNF4P78317 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.6□□□□□ -1.83
RNF4P78317 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
RNF4P78317 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.59□□□□□ -1.83
RNF4P78317 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
RNF4P78317 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms