Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
CTCFP49711 MIR6845-201ENST00000613182 61 ntBASIC2.75□□□□□ -1.97
CTCFP49711 AL136221.1-201ENST00000621449 509 ntBASIC2.75□□□□□ -1.97
CTCFP49711 MIR1291-201ENST00000627649 87 ntBASIC2.75□□□□□ -1.97
CTCFP49711 Z75746.1-201ENST00000440243 2080 ntBASIC2.75□□□□□ -1.97
CTCFP49711 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
CTCFP49711 MIR6073-201ENST00000352083 89 ntBASIC2.74□□□□□ -1.97
CTCFP49711 RNU6-1010P-201ENST00000362757 107 ntBASIC2.74□□□□□ -1.97
CTCFP49711 Y_RNA.86-201ENST00000363020 111 ntBASIC2.74□□□□□ -1.97
CTCFP49711 RNU6-1252P-201ENST00000363054 104 ntBASIC2.74□□□□□ -1.97
CTCFP49711 RNU6-486P-201ENST00000363116 107 ntBASIC2.74□□□□□ -1.97
CTCFP49711 RNA5SP325-201ENST00000363756 130 ntBASIC2.74□□□□□ -1.97
CTCFP49711 SNORD113-7-201ENST00000363762 77 ntBASIC2.74□□□□□ -1.97
CTCFP49711 SNORA67.1-201ENST00000364749 141 ntBASIC2.74□□□□□ -1.97
CTCFP49711 RNU6-1329P-201ENST00000365664 107 ntBASIC2.74□□□□□ -1.97
CTCFP49711 Y_RNA.414-201ENST00000384011 101 ntBASIC2.74□□□□□ -1.97
CTCFP49711 MIR613-201ENST00000385248 95 ntBASIC2.74□□□□□ -1.97
CTCFP49711 RNA5SP390-201ENST00000410191 113 ntBASIC2.74□□□□□ -1.97
CTCFP49711 AC097463.2-201ENST00000421074 142 ntBASIC2.74□□□□□ -1.97
CTCFP49711 AL591043.1-201ENST00000432461 424 ntBASIC2.74□□□□□ -1.97
CTCFP49711 USP9YP28-201ENST00000435142 589 ntBASIC2.74□□□□□ -1.97
CTCFP49711 CR769767.1-201ENST00000436337 346 ntBASIC2.74□□□□□ -1.97
CTCFP49711 AC012308.1-201ENST00000451232 178 ntBASIC2.74□□□□□ -1.97
CTCFP49711 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.74□□□□□ -1.97
CTCFP49711 RPL22P13-201ENST00000493291 347 ntBASIC2.74□□□□□ -1.97
CTCFP49711 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.74□□□□□ -1.97
CTCFP49711 AC008628.2-201ENST00000502605 298 ntBASIC2.74□□□□□ -1.97
CTCFP49711 MIR3199-1-201ENST00000582434 88 ntBASIC2.74□□□□□ -1.97
CTCFP49711 ELOCP5-201ENST00000604924 333 ntBASIC2.74□□□□□ -1.97
CTCFP49711 AC096772.1-201ENST00000609146 564 ntBASIC2.74□□□□□ -1.97
CTCFP49711 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.74□□□□□ -1.97
CTCFP49711 AC024581.2-201ENST00000619986 252 ntBASIC2.74□□□□□ -1.97
CTCFP49711 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.74□□□□□ -1.97
CTCFP49711 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CTCFP49711 Z82209.1-201ENST00000422141 2135 ntBASIC2.74□□□□□ -1.97
CTCFP49711 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CTCFP49711 MIR218-1-201ENST00000384999 110 ntBASIC2.73□□□□□ -1.97
CTCFP49711 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
CTCFP49711 RNA5SP181-201ENST00000410246 98 ntBASIC2.73□□□□□ -1.97
CTCFP49711 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.73□□□□□ -1.97
CTCFP49711 AC009161.1-201ENST00000417306 376 ntBASIC2.73□□□□□ -1.97
CTCFP49711 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.73□□□□□ -1.97
CTCFP49711 MTCO3P18-201ENST00000440206 761 ntBASIC2.73□□□□□ -1.97
CTCFP49711 AC243964.1-201ENST00000441814 261 ntBASIC2.73□□□□□ -1.97
CTCFP49711 MTCO2P3-201ENST00000442543 421 ntBASIC2.73□□□□□ -1.97
CTCFP49711 RPS27P27-201ENST00000498779 255 ntBASIC2.73□□□□□ -1.97
CTCFP49711 TRBVA-201ENST00000498804 316 ntBASIC2.73□□□□□ -1.97
CTCFP49711 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.73□□□□□ -1.97
CTCFP49711 AC023141.11-201ENST00000508864 202 ntBASIC2.73□□□□□ -1.97
CTCFP49711 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.73□□□□□ -1.97
CTCFP49711 AC092436.3-201ENST00000511788 257 ntBASIC2.73□□□□□ -1.97
CTCFP49711 SMURF2P1-201ENST00000514992 481 ntBASIC2.73□□□□□ -1.97
CTCFP49711 RNU6-1332P-201ENST00000516666 104 ntBASIC2.73□□□□□ -1.97
CTCFP49711 RNU1-104P-201ENST00000517280 175 ntBASIC2.73□□□□□ -1.97
CTCFP49711 AC104576.1-201ENST00000524225 88 ntBASIC2.73□□□□□ -1.97
CTCFP49711 AC100830.2-201ENST00000581636 240 ntBASIC2.73□□□□□ -1.97
CTCFP49711 BNIP3P16-201ENST00000589779 534 ntBASIC2.73□□□□□ -1.97
CTCFP49711 VN1R107P-201ENST00000601784 209 ntBASIC2.73□□□□□ -1.97
CTCFP49711 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.73□□□□□ -1.97
CTCFP49711 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CTCFP49711 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CTCFP49711 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CTCFP49711 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.72□□□□□ -1.97
CTCFP49711 Z82195.2-201ENST00000612348 18351 ntBASIC2.72□□□□□ -1.97
CTCFP49711 AC016717.2-201ENST00000609089 5141 ntBASIC2.72□□□□□ -1.97
CTCFP49711 RNU1-72P-201ENST00000362976 153 ntBASIC2.72□□□□□ -1.97
CTCFP49711 SNORD114-19-201ENST00000363072 75 ntBASIC2.72□□□□□ -1.97
CTCFP49711 SNORA67.3-201ENST00000384366 140 ntBASIC2.72□□□□□ -1.97
CTCFP49711 RNU6-831P-201ENST00000384548 107 ntBASIC2.72□□□□□ -1.97
CTCFP49711 RNU6-1072P-201ENST00000384703 107 ntBASIC2.72□□□□□ -1.97
CTCFP49711 RNU6-443P-201ENST00000384780 107 ntBASIC2.72□□□□□ -1.97
CTCFP49711 RNU6-220P-201ENST00000390919 107 ntBASIC2.72□□□□□ -1.97
CTCFP49711 RNA5SP210-201ENST00000391034 120 ntBASIC2.72□□□□□ -1.97
CTCFP49711 SNORA17.3-201ENST00000391159 129 ntBASIC2.72□□□□□ -1.97
CTCFP49711 AL356776.1-201ENST00000406574 447 ntBASIC2.72□□□□□ -1.97
CTCFP49711 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.72□□□□□ -1.97
CTCFP49711 RNU6-293P-201ENST00000411259 106 ntBASIC2.72□□□□□ -1.97
CTCFP49711 VN1R36P-201ENST00000414936 291 ntBASIC2.72□□□□□ -1.97
CTCFP49711 MTND1P23-201ENST00000416931 372 ntBASIC2.72□□□□□ -1.97
CTCFP49711 BTF3P4-201ENST00000418852 495 ntBASIC2.72□□□□□ -1.97
CTCFP49711 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.72□□□□□ -1.97
CTCFP49711 AC092473.1-201ENST00000441098 221 ntBASIC2.72□□□□□ -1.97
CTCFP49711 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.72□□□□□ -1.97
CTCFP49711 AK3P2-201ENST00000507976 429 ntBASIC2.72□□□□□ -1.97
CTCFP49711 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.72□□□□□ -1.97
CTCFP49711 AC026436.1-201ENST00000510537 270 ntBASIC2.72□□□□□ -1.97
CTCFP49711 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.72□□□□□ -1.97
CTCFP49711 RNA5SP402-201ENST00000517148 110 ntBASIC2.72□□□□□ -1.97
CTCFP49711 AC107953.1-201ENST00000522216 297 ntBASIC2.72□□□□□ -1.97
CTCFP49711 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.72□□□□□ -1.97
CTCFP49711 MIR5571-201ENST00000577998 113 ntBASIC2.72□□□□□ -1.97
CTCFP49711 MIR3942-201ENST00000585264 109 ntBASIC2.72□□□□□ -1.97
CTCFP49711 AC069294.1-201ENST00000608397 350 ntBASIC2.72□□□□□ -1.97
CTCFP49711 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.72□□□□□ -1.97
CTCFP49711 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CTCFP49711 RNU6-692P-201ENST00000384496 107 ntBASIC2.71□□□□□ -1.98
CTCFP49711 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
CTCFP49711 RNU2-23P-201ENST00000410545 195 ntBASIC2.71□□□□□ -1.98
CTCFP49711 AC138623.1-201ENST00000418060 216 ntBASIC2.71□□□□□ -1.98
CTCFP49711 EIF4EP4-201ENST00000424916 578 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms