Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.37□□□□□ -2.03
HOXA1P49639 AC096644.2-201ENST00000429278 159 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 AC124916.1-201ENST00000444020 547 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXA1P49639 snoU13.6-201ENST00000458785 104 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 AF186996.7-201ENST00000492781 209 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 AC114801.2-201ENST00000503825 781 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 SMURF2P1-201ENST00000514992 481 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 SNORA31.16-201ENST00000516773 139 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 Y_RNA.711-201ENST00000516993 102 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.37□□□□□ -2.03
HOXA1P49639 SNRPGP18-201ENST00000553000 214 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.37□□□□□ -2.03
HOXA1P49639 MIR5696-201ENST00000578474 85 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 AC022432.1-201ENST00000595739 310 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 MIR6895-201ENST00000613497 78 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.37□□□□□ -2.03
HOXA1P49639 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
HOXA1P49639 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXA1P49639 U6.105-201ENST00000637379 88 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 MTND4P1-201ENST00000457501 1466 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
HOXA1P49639 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXA1P49639 Z82209.1-201ENST00000422141 2135 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 ZNF299P-201ENST00000406845 1804 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 RNU6-874P-201ENST00000362390 105 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 Y_RNA.80-201ENST00000362996 102 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 Y_RNA.128-201ENST00000363391 112 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 RNU6-968P-201ENST00000384076 107 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 Y_RNA.485-201ENST00000384395 102 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 EIF4EP2-201ENST00000422816 654 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXA1P49639 TOMM22P6-201ENST00000465035 409 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 RPL31P41-201ENST00000477967 372 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 AL163540.1-201ENST00000485382 386 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 AC006445.1-201ENST00000491925 405 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXA1P49639 AC107222.1-201ENST00000510899 637 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 RNU5B-3P-201ENST00000516601 115 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 CKS1BP7-201ENST00000522230 235 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 AC121758.2-201ENST00000553271 193 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 MIR5694-201ENST00000581190 76 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 AC010928.2-201ENST00000588017 287 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 AC012314.7-201ENST00000619693 93 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 TEX41-300ENST00000631048 69 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXA1P49639 AL450472.1-202ENST00000637286 180 ntBASIC2.36□□□□□ -2.03
HOXA1P49639 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXA1P49639 AC233981.2-201ENST00000611524 1614 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 AC008669.1-201ENST00000565823 2178 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
HOXA1P49639 SNORA63-201ENST00000363450 132 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 Y_RNA.148-201ENST00000363557 117 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 RNU6-595P-201ENST00000363944 107 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 SNORA38.1-201ENST00000364172 131 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 RNA5SP267-201ENST00000364893 126 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 SNORA9.2-201ENST00000365361 133 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 SNORA29-201ENST00000384183 140 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 SNORA41-201ENST00000384675 132 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 MIR23B-201ENST00000384832 97 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 MIR512-1-201ENST00000384913 84 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 MIR627-201ENST00000384979 97 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 MIR549A-201ENST00000385268 96 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 MIR670-201ENST00000390142 98 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 RPL23AP95-201ENST00000426806 265 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 YME1L1P1-201ENST00000429435 297 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 AC092423.1-201ENST00000430165 186 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 AL445305.1-201ENST00000432577 575 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 GPM6BP3-201ENST00000442797 145 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 AL353705.4-201ENST00000449661 238 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 CHEK2P4-201ENST00000450340 246 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 RNU7-169P-201ENST00000459456 61 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 RPL36AP48-201ENST00000485521 314 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 RPL30P10-201ENST00000488148 337 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 RPL17P19-201ENST00000489069 552 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 RNU6-264P-201ENST00000517134 104 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 RN7SKP295-201ENST00000517264 153 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 AC007375.1-201ENST00000554513 578 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXA1P49639 MIR5680-201ENST00000577577 84 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 MIR4429-201ENST00000580105 73 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 AC005899.2-201ENST00000584353 90 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXA1P49639 AL078605.1-201ENST00000603529 500 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 AC006157.1-201ENST00000611750 366 ntBASIC2.35□□□□□ -2.03
HOXA1P49639 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXA1P49639 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.35□□□□□ -2.03
HOXA1P49639 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.03
HOXA1P49639 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
HOXA1P49639 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
HOXA1P49639 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.03
HOXA1P49639 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
HOXA1P49639 RNU1-35P-201ENST00000362782 153 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 5S_rRNA.1-201ENST00000364415 116 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 Y_RNA.314-201ENST00000365114 102 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 RNU6-487P-201ENST00000365430 104 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 Y_RNA.405-201ENST00000383979 100 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 Y_RNA.451-201ENST00000384200 100 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 RNY1P14-201ENST00000384426 108 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 Y_RNA.524-201ENST00000384564 100 ntBASIC2.34□□□□□ -2.03
HOXA1P49639 RNU6-1222P-201ENST00000384615 107 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms