Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MTND1P4-201ENST00000435196 415 ntBASIC2.07□□□□□ -2.08
CDX1P47902 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.07□□□□□ -2.08
CDX1P47902 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.07□□□□□ -2.08
CDX1P47902 AC108938.1-201ENST00000451204 136 ntBASIC2.07□□□□□ -2.08
CDX1P47902 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.07□□□□□ -2.08
CDX1P47902 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.07□□□□□ -2.08
CDX1P47902 RNU6-256P-201ENST00000516747 97 ntBASIC2.07□□□□□ -2.08
CDX1P47902 AC233702.2-202ENST00000562547 291 ntBASIC2.07□□□□□ -2.08
CDX1P47902 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.07□□□□□ -2.08
CDX1P47902 Z98751.3-201ENST00000604447 521 ntBASIC2.07□□□□□ -2.08
CDX1P47902 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CDX1P47902 AC007014.2-201ENST00000615581 479 ntBASIC2.07□□□□□ -2.08
CDX1P47902 AL132822.1-201ENST00000617063 513 ntBASIC2.07□□□□□ -2.08
CDX1P47902 AC009033.1-201ENST00000624279 431 ntBASIC2.07□□□□□ -2.08
CDX1P47902 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CDX1P47902 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CDX1P47902 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
CDX1P47902 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.06□□□□□ -2.08
CDX1P47902 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
CDX1P47902 Y_RNA.123-201ENST00000363338 102 ntBASIC2.06□□□□□ -2.08
CDX1P47902 SNORA32.2-201ENST00000384049 122 ntBASIC2.06□□□□□ -2.08
CDX1P47902 SNORA36A-201ENST00000384221 132 ntBASIC2.06□□□□□ -2.08
CDX1P47902 SNORA46.1-201ENST00000391069 153 ntBASIC2.06□□□□□ -2.08
CDX1P47902 SNORA26.3-201ENST00000391119 136 ntBASIC2.06□□□□□ -2.08
CDX1P47902 MTCYBP2-201ENST00000407745 171 ntBASIC2.06□□□□□ -2.08
CDX1P47902 AL645568.3-201ENST00000433683 316 ntBASIC2.06□□□□□ -2.08
CDX1P47902 MTCO3P18-201ENST00000440206 761 ntBASIC2.06□□□□□ -2.08
CDX1P47902 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.06□□□□□ -2.08
CDX1P47902 RPS29P27-201ENST00000463711 170 ntBASIC2.06□□□□□ -2.08
CDX1P47902 AC079804.2-201ENST00000490376 200 ntBASIC2.06□□□□□ -2.08
CDX1P47902 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.06□□□□□ -2.08
CDX1P47902 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.06□□□□□ -2.08
CDX1P47902 RNA5SP282-201ENST00000516355 108 ntBASIC2.06□□□□□ -2.08
CDX1P47902 RNA5SP137-201ENST00000516833 135 ntBASIC2.06□□□□□ -2.08
CDX1P47902 RNU6-1314P-201ENST00000517139 104 ntBASIC2.06□□□□□ -2.08
CDX1P47902 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.06□□□□□ -2.08
CDX1P47902 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.06□□□□□ -2.08
CDX1P47902 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.06□□□□□ -2.08
CDX1P47902 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.06□□□□□ -2.08
CDX1P47902 CYP4A27P-201ENST00000567218 190 ntBASIC2.06□□□□□ -2.08
CDX1P47902 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.06□□□□□ -2.08
CDX1P47902 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.06□□□□□ -2.08
CDX1P47902 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.06□□□□□ -2.08
CDX1P47902 AL078605.1-201ENST00000603529 500 ntBASIC2.06□□□□□ -2.08
CDX1P47902 AP000654.2-201ENST00000605633 586 ntBASIC2.06□□□□□ -2.08
CDX1P47902 AC002553.4-201ENST00000616896 331 ntBASIC2.06□□□□□ -2.08
CDX1P47902 SNORA43.4-201ENST00000629559 138 ntBASIC2.06□□□□□ -2.08
CDX1P47902 AL136360.1-201ENST00000503377 1900 ntBASIC2.06□□□□□ -2.08
CDX1P47902 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
CDX1P47902 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CDX1P47902 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
CDX1P47902 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CDX1P47902 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.05□□□□□ -2.08
CDX1P47902 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.05□□□□□ -2.08
CDX1P47902 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CDX1P47902 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
CDX1P47902 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CDX1P47902 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
CDX1P47902 RNU6-562P-201ENST00000362731 107 ntBASIC2.05□□□□□ -2.08
CDX1P47902 SNORD115-3-201ENST00000363100 82 ntBASIC2.05□□□□□ -2.08
CDX1P47902 U3.9-201ENST00000363823 204 ntBASIC2.05□□□□□ -2.08
CDX1P47902 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
CDX1P47902 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.05□□□□□ -2.08
CDX1P47902 AC012306.1-201ENST00000423267 114 ntBASIC2.05□□□□□ -2.08
CDX1P47902 WARS2P1-201ENST00000429678 537 ntBASIC2.05□□□□□ -2.08
CDX1P47902 USP9YP28-201ENST00000435142 589 ntBASIC2.05□□□□□ -2.08
CDX1P47902 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.05□□□□□ -2.08
CDX1P47902 AC245102.2-201ENST00000448956 180 ntBASIC2.05□□□□□ -2.08
CDX1P47902 PRELID3BP1-201ENST00000457142 540 ntBASIC2.05□□□□□ -2.08
CDX1P47902 AC107032.1-201ENST00000485945 480 ntBASIC2.05□□□□□ -2.08
CDX1P47902 MIR449C-201ENST00000516047 92 ntBASIC2.05□□□□□ -2.08
CDX1P47902 RNU6-273P-201ENST00000516937 96 ntBASIC2.05□□□□□ -2.08
CDX1P47902 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.05□□□□□ -2.08
CDX1P47902 CPDP1-201ENST00000579660 283 ntBASIC2.05□□□□□ -2.08
CDX1P47902 MIR3672-201ENST00000584290 82 ntBASIC2.05□□□□□ -2.08
CDX1P47902 AC146944.4-201ENST00000602697 718 ntBASIC2.05□□□□□ -2.08
CDX1P47902 PCGEM1.1-201ENST00000613431 131 ntBASIC2.05□□□□□ -2.08
CDX1P47902 AL138726.1-201ENST00000614873 333 ntBASIC2.05□□□□□ -2.08
CDX1P47902 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.05□□□□□ -2.08
CDX1P47902 MIR1248-201ENST00000629190 106 ntBASIC2.05□□□□□ -2.08
CDX1P47902 AL450472.1-202ENST00000637286 180 ntBASIC2.05□□□□□ -2.08
CDX1P47902 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
CDX1P47902 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.04□□□□□ -2.08
CDX1P47902 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
CDX1P47902 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.04□□□□□ -2.08
CDX1P47902 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.04□□□□□ -2.08
CDX1P47902 Y_RNA.151-201ENST00000363566 112 ntBASIC2.04□□□□□ -2.08
CDX1P47902 SNORD32B-201ENST00000364460 84 ntBASIC2.04□□□□□ -2.08
CDX1P47902 RNU6-26P-201ENST00000383985 107 ntBASIC2.04□□□□□ -2.08
CDX1P47902 SNORA51.11-201ENST00000384442 131 ntBASIC2.04□□□□□ -2.08
CDX1P47902 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
CDX1P47902 MIR208B-201ENST00000401172 77 ntBASIC2.04□□□□□ -2.08
CDX1P47902 AL356057.3-201ENST00000402607 340 ntBASIC2.04□□□□□ -2.08
CDX1P47902 Y_RNA.619-201ENST00000410951 90 ntBASIC2.04□□□□□ -2.08
CDX1P47902 AL513185.2-201ENST00000425543 193 ntBASIC2.04□□□□□ -2.08
CDX1P47902 PCMTD1P1-201ENST00000455560 355 ntBASIC2.04□□□□□ -2.08
CDX1P47902 RNU7-187P-201ENST00000458985 68 ntBASIC2.04□□□□□ -2.08
CDX1P47902 RNU7-66P-201ENST00000459469 62 ntBASIC2.04□□□□□ -2.08
CDX1P47902 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.04□□□□□ -2.08
CDX1P47902 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms