Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 UBE2V2P2-201ENST00000587677 504 ntBASIC2.18□□□□□ -2.06
SOX3P41225 AC073410.2-201ENST00000603240 332 ntBASIC2.18□□□□□ -2.06
SOX3P41225 AL356280.1-201ENST00000603614 379 ntBASIC2.18□□□□□ -2.06
SOX3P41225 AL133215.3-201ENST00000609801 448 ntBASIC2.18□□□□□ -2.06
SOX3P41225 AC013412.1-201ENST00000610687 192 ntBASIC2.18□□□□□ -2.06
SOX3P41225 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.18□□□□□ -2.06
SOX3P41225 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
SOX3P41225 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
SOX3P41225 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.17□□□□□ -2.06
SOX3P41225 ZNF720P1-201ENST00000562403 1939 ntBASIC2.17□□□□□ -2.06
SOX3P41225 Y_RNA.40-201ENST00000362645 93 ntBASIC2.17□□□□□ -2.06
SOX3P41225 Y_RNA.151-201ENST00000363566 112 ntBASIC2.17□□□□□ -2.06
SOX3P41225 RNU6-1141P-201ENST00000364520 107 ntBASIC2.17□□□□□ -2.06
SOX3P41225 SNORD81.2-201ENST00000365153 76 ntBASIC2.17□□□□□ -2.06
SOX3P41225 Y_RNA.339-201ENST00000365325 102 ntBASIC2.17□□□□□ -2.06
SOX3P41225 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
SOX3P41225 MIR548K-201ENST00000408406 116 ntBASIC2.17□□□□□ -2.06
SOX3P41225 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.17□□□□□ -2.06
SOX3P41225 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.17□□□□□ -2.06
SOX3P41225 AC008267.5-201ENST00000424928 265 ntBASIC2.17□□□□□ -2.06
SOX3P41225 AIMP1P2-201ENST00000425294 312 ntBASIC2.17□□□□□ -2.06
SOX3P41225 RPL23AP95-201ENST00000426806 265 ntBASIC2.17□□□□□ -2.06
SOX3P41225 AC092427.1-202ENST00000430569 476 ntBASIC2.17□□□□□ -2.06
SOX3P41225 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.17□□□□□ -2.06
SOX3P41225 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.17□□□□□ -2.06
SOX3P41225 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.17□□□□□ -2.06
SOX3P41225 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.17□□□□□ -2.06
SOX3P41225 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.17□□□□□ -2.06
SOX3P41225 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.17□□□□□ -2.06
SOX3P41225 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.17□□□□□ -2.06
SOX3P41225 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.17□□□□□ -2.06
SOX3P41225 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.17□□□□□ -2.06
SOX3P41225 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.17□□□□□ -2.06
SOX3P41225 SMURF2P1-201ENST00000514992 481 ntBASIC2.17□□□□□ -2.06
SOX3P41225 RNU6-507P-201ENST00000516045 100 ntBASIC2.17□□□□□ -2.06
SOX3P41225 AP005902.1-201ENST00000521358 186 ntBASIC2.17□□□□□ -2.06
SOX3P41225 AP005639.2-201ENST00000527592 928 ntBASIC2.17□□□□□ -2.06
SOX3P41225 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.17□□□□□ -2.06
SOX3P41225 AC005730.3-201ENST00000583067 366 ntBASIC2.17□□□□□ -2.06
SOX3P41225 AC067747.1-201ENST00000608026 250 ntBASIC2.17□□□□□ -2.06
SOX3P41225 AC069294.1-201ENST00000608397 350 ntBASIC2.17□□□□□ -2.06
SOX3P41225 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.17□□□□□ -2.06
SOX3P41225 AC064859.1-201ENST00000624741 174 ntBASIC2.17□□□□□ -2.06
SOX3P41225 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
SOX3P41225 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
SOX3P41225 RNU6-227P-201ENST00000362865 103 ntBASIC2.16□□□□□ -2.06
SOX3P41225 RNU6-220P-201ENST00000390919 107 ntBASIC2.16□□□□□ -2.06
SOX3P41225 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.16□□□□□ -2.06
SOX3P41225 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.16□□□□□ -2.06
SOX3P41225 AL139396.1-201ENST00000421137 167 ntBASIC2.16□□□□□ -2.06
SOX3P41225 MTND4LP11-201ENST00000422184 280 ntBASIC2.16□□□□□ -2.06
SOX3P41225 SUMO1P4-201ENST00000429430 302 ntBASIC2.16□□□□□ -2.06
SOX3P41225 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.16□□□□□ -2.06
SOX3P41225 HMGB1P18-201ENST00000438801 619 ntBASIC2.16□□□□□ -2.06
SOX3P41225 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.16□□□□□ -2.06
SOX3P41225 PCMTD1P1-201ENST00000455560 355 ntBASIC2.16□□□□□ -2.06
SOX3P41225 RN7SL429P-201ENST00000479090 223 ntBASIC2.16□□□□□ -2.06
SOX3P41225 TRBV12-1-201ENST00000479785 344 ntBASIC2.16□□□□□ -2.06
SOX3P41225 RN7SL489P-201ENST00000486185 223 ntBASIC2.16□□□□□ -2.06
SOX3P41225 RN7SL327P-201ENST00000488659 223 ntBASIC2.16□□□□□ -2.06
SOX3P41225 RPL30P1-201ENST00000488676 339 ntBASIC2.16□□□□□ -2.06
SOX3P41225 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.16□□□□□ -2.06
SOX3P41225 MTND5P5-201ENST00000503764 376 ntBASIC2.16□□□□□ -2.06
SOX3P41225 AC114801.2-201ENST00000503825 781 ntBASIC2.16□□□□□ -2.06
SOX3P41225 AC008549.1-201ENST00000512900 643 ntBASIC2.16□□□□□ -2.06
SOX3P41225 RNA5SP281-201ENST00000516504 135 ntBASIC2.16□□□□□ -2.06
SOX3P41225 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.16□□□□□ -2.06
SOX3P41225 MIR4790-201ENST00000577799 79 ntBASIC2.16□□□□□ -2.06
SOX3P41225 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.16□□□□□ -2.06
SOX3P41225 AC105245.1-201ENST00000581934 244 ntBASIC2.16□□□□□ -2.06
SOX3P41225 AC091135.1-201ENST00000585943 307 ntBASIC2.16□□□□□ -2.06
SOX3P41225 MIR8076-201ENST00000611401 83 ntBASIC2.16□□□□□ -2.06
SOX3P41225 RN7SL853P-201ENST00000617250 223 ntBASIC2.16□□□□□ -2.06
SOX3P41225 AC092794.2-201ENST00000620933 563 ntBASIC2.16□□□□□ -2.06
SOX3P41225 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
SOX3P41225 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.15□□□□□ -2.06
SOX3P41225 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
SOX3P41225 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
SOX3P41225 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
SOX3P41225 RNU1-72P-201ENST00000362976 153 ntBASIC2.15□□□□□ -2.07
SOX3P41225 RN7SKP61-201ENST00000410642 295 ntBASIC2.15□□□□□ -2.07
SOX3P41225 AC078809.1-201ENST00000427601 140 ntBASIC2.15□□□□□ -2.07
SOX3P41225 AL133396.1-201ENST00000432048 687 ntBASIC2.15□□□□□ -2.07
SOX3P41225 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.15□□□□□ -2.07
SOX3P41225 AL353572.1-201ENST00000442490 417 ntBASIC2.15□□□□□ -2.07
SOX3P41225 MTND5P20-201ENST00000448677 143 ntBASIC2.15□□□□□ -2.07
SOX3P41225 AL121594.1-201ENST00000475906 575 ntBASIC2.15□□□□□ -2.07
SOX3P41225 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.15□□□□□ -2.07
SOX3P41225 AC103851.1-201ENST00000506833 274 ntBASIC2.15□□□□□ -2.07
SOX3P41225 PTP4A1P4-201ENST00000512479 322 ntBASIC2.15□□□□□ -2.07
SOX3P41225 RNU2-53P-201ENST00000516257 147 ntBASIC2.15□□□□□ -2.07
SOX3P41225 Y_RNA.691-201ENST00000516611 103 ntBASIC2.15□□□□□ -2.07
SOX3P41225 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.15□□□□□ -2.07
SOX3P41225 AC115990.1-201ENST00000526957 301 ntBASIC2.15□□□□□ -2.07
SOX3P41225 AC005668.1-201ENST00000571142 476 ntBASIC2.15□□□□□ -2.07
SOX3P41225 AC019193.3-201ENST00000609144 554 ntBASIC2.15□□□□□ -2.07
SOX3P41225 uc_338.5-201ENST00000611839 155 ntBASIC2.15□□□□□ -2.07
SOX3P41225 AL161423.1-201ENST00000613700 262 ntBASIC2.15□□□□□ -2.07
SOX3P41225 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.15□□□□□ -2.07
SOX3P41225 AP000560.1-201ENST00000624150 1937 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms