Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RPL21P2-201ENST00000440049 481 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 MTATP6P23-201ENST00000440153 476 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 AMD1P1-201ENST00000457220 922 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 AC112771.1-201ENST00000463581 102 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 SNRPGP7-201ENST00000469016 106 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXC9P31274 HMGN1P12-201ENST00000499125 195 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 AC008526.1-201ENST00000509149 338 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 RNU7-30P-201ENST00000516835 62 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 SNORA31.23-201ENST00000517219 133 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXC9P31274 AC244517.12-201ENST00000623581 663 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
HOXC9P31274 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
HOXC9P31274 RNU6-562P-201ENST00000362731 107 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 U8.9-201ENST00000365667 134 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 RNU6-1083P-201ENST00000384022 107 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 RNU6-843P-201ENST00000384454 104 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 RNU2-25P-201ENST00000411041 191 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 RNU6-1245P-201ENST00000411130 106 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 RNU7-187P-201ENST00000458985 68 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 AC130509.1-201ENST00000464158 433 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 AC018437.1-201ENST00000492214 406 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 AC096745.1-201ENST00000509945 370 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 Y_RNA.682-201ENST00000516457 100 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 AC134698.4-201ENST00000523451 826 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 COPS8P3-201ENST00000526024 482 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXC9P31274 MIR4765-201ENST00000585007 77 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 AC023043.2-201ENST00000589678 1026 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXC9P31274 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.63□□□□□ -1.99
HOXC9P31274 AL359198.2-201ENST00000611836 194 ntBASIC2.63□□□□□ -1.99
HOXC9P31274 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
HOXC9P31274 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXC9P31274 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXC9P31274 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXC9P31274 Y_RNA.184-201ENST00000363884 108 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 SNORD116-11-201ENST00000383882 92 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 RPL19P1-201ENST00000411635 428 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 PDCL2P1-201ENST00000419302 352 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 UBE2V1P4-201ENST00000425374 344 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 HMGB1P18-201ENST00000438801 619 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 AC003989.2-201ENST00000440224 169 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 MTCO2P3-201ENST00000442543 421 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 AC013470.1-201ENST00000453438 462 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 RNU6-1037P-201ENST00000459571 107 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 RPL30P12-201ENST00000474666 353 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 RPL23AP70-201ENST00000483361 460 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 RPL36AP48-201ENST00000485521 314 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 AP001025.1-201ENST00000486139 332 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXC9P31274 AC046134.1-201ENST00000514454 666 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 RNU6-507P-201ENST00000516045 100 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 RNU6-566P-201ENST00000516790 107 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 AP005639.2-201ENST00000527592 928 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXC9P31274 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXC9P31274 TRAV32-201ENST00000553993 340 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 MIR4790-201ENST00000577799 79 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 RPS15AP11-201ENST00000594193 385 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 RPL23AP88-201ENST00000605759 454 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HOXC9P31274 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 uc_338.14-201ENST00000613162 166 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 uc_338.15-201ENST00000615470 191 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 AC022306.2-201ENST00000617563 647 ntBASIC2.62□□□□□ -1.99
HOXC9P31274 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXC9P31274 AL109809.4-201ENST00000603520 2185 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXC9P31274 RNU6-1317P-201ENST00000364582 104 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 Y_RNA.301-201ENST00000364990 103 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 SNORD81.2-201ENST00000365153 76 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
HOXC9P31274 RNU6-692P-201ENST00000384496 107 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 RNU6-95P-201ENST00000384697 107 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 RNU6-325P-201ENST00000411132 105 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 AC124916.1-201ENST00000444020 547 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXC9P31274 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXC9P31274 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXC9P31274 AC103851.1-201ENST00000506833 274 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXC9P31274 RNU5B-3P-201ENST00000516601 115 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 SCARNA11.3-201ENST00000517276 130 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 AC007536.1-201ENST00000533382 349 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 AC100830.2-201ENST00000581636 240 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 AP000942.3-201ENST00000603702 160 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 AC024581.2-201ENST00000619986 252 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXC9P31274 AL359854.1-201ENST00000614203 1594 ntBASIC2.61□□□□□ -1.99
HOXC9P31274 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HOXC9P31274 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
HOXC9P31274 Y_RNA.135-201ENST00000363439 95 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 MIR544A-201ENST00000384855 91 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 MIR218-1-201ENST00000384999 110 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 RNU6-1328P-201ENST00000410938 106 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXC9P31274 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXC9P31274 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms